FastQCFastQC Report
Tue 3 Oct 2023
HL553DRX3_n01_S3_D7_452_TCell.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHL553DRX3_n01_S3_D7_452_TCell.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59841603
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGCTGTTAATTGTCAGTTCAGTG10570801.7664633749867966No Hit
CCTCTATATAAATGCGTAGGGGTTTT1507170.2518598975365015No Hit
TGTTGGTTGATTGTAGATATTGGGCT1326430.22165682961400615No Hit
ACCTTTGCACGGTTAGGGTACCGCGG1111470.18573533198968617No Hit
TGCTGTTAATTGTCAGTTCAGTGTTT1042150.1741514177018286No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT955740.159711630719518No Hit
AGTGAGGGTAATAATGACTTGTTGGT850860.14218536224706413No Hit
TGCTGCTTTTAGGCCTACTATGGGTG841480.14061789086766274No Hit
TGCGCTTACTTTGTAGCCTTCATCAG772080.12902060795396808No Hit
TGCTGTGTTATGCCCGCCTCTTCACG693400.1158725644431684No Hit
AGTTGGTTGATTGTAGATATTGGGCT671060.11213937567815487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)