FastQCFastQC Report
Tue 3 Oct 2023
HL553DRX3_n01_S2_D3_452_TCell.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHL553DRX3_n01_S2_D3_452_TCell.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52214823
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTTTTACTTCCTCTAGATAGTCA1125020.21545988961793475No Hit
TGCACCTGCGGCGGCTCCACCCGGGC1046470.20041626876720428No Hit
GTACTTTAAGTTTCAGCTTTGCAACC818070.15667390081931332No Hit
CCTCTATATAAATGCGTAGGGGTTTT765340.1465752359248637No Hit
AGTTGGTTGATTGTAGATATTGGGCT652490.12496259922206382No Hit
ATGAGGGTAATAATGACTTGTTGGTT568100.10880052202800726No Hit
GCTGCGGATATGGGTACGGCCCGGCG546360.10463695338007754No Hit
TGACTTTTACTTCCTCTAGATAGTCA523250.10021100713105931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)