HL52FAFXY_n01_ColTCP21_Col_UB_i.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HL52FAFXY_n01_ColTCP21_Col_UB_i.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22042739
Sequences flagged as poor quality	0
Sequence length	76
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT	633468	2.8738170877947606	TruSeq Adapter, Index 2 (97% over 37bp)
CGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATGCC	56967	0.2584388446463028	TruSeq Adapter, Index 2 (97% over 34bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26141	0.11859234008985908	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	77170	61.322784	48
GCCGTCT	76695	61.223972	51
TGCCGTC	77180	61.19268	50
ATGCCGT	77420	61.079556	49
CGTATGC	77895	60.8374	46
GTATGCC	78140	60.669044	47
CTCGTAT	78560	59.32906	44
TCGTATG	79900	59.15306	45
CCGTCTT	79900	58.82068	52
CTGCTTG	79965	58.217533	59
TCTCGTA	80740	57.68815	43
TATCTCG	81805	56.98846	41
CGTCTTC	83025	56.57299	53
ATCTCGT	83035	56.131645	42
CTTCTGC	83570	56.05328	56
CGCTCAT	87100	54.58911	34
GCTTGAA	86405	54.38881	61
TGCTTGA	86035	54.289127	60
TTCTGCT	86110	53.98935	57
TCTGCTT	87365	53.42187	58