FastQCFastQC Report
Wed 26 Aug 2020
HL2MTBGXG_n01_ps-bZIP53..ph-bZIP25_Col..h-B_q2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHL2MTBGXG_n01_ps-bZIP53..ph-bZIP25_Col..h-B_q2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences718387
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTGTAC450.004307961631.11027720
ATCGGGG2500.029.40125839
CGGGGGG2250.026.44557641
TCGGGGG2800.025.00106840
CACTCCG3200.024.06185528
ACTCCGG3300.023.33270829
AATCGGG3350.021.94123838
TCCGGAG3800.021.18364131
CTCCGGA4150.020.2404230
CCGGAGA4000.020.1244632
CGGGGGT1257.822762E-519.59947444
GAATCGG4150.018.5550137
GTCACTC4150.018.55371726
CAGTCAC4350.018.50524924
GATGGCC1000.00968843917.4995361
TCCAGTC4650.017.31136322
ACTCCAG4950.016.96924220
CTCCAGT4850.016.59749221
CGGAGAA4950.016.2621933
TCACTCC4750.016.2100927
Produced by FastQC (version 0.11.5)