FastQCFastQC Report
Wed 26 Aug 2020
HL2MTBGXG_n01_ps-ColSPL9..ph-C24SPL9_Col..s-B..h-B_q.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHL2MTBGXG_n01_ps-ColSPL9..ph-C24SPL9_Col..s-B..h-B_q.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3922323
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGCGGA3350.00122400519.4029222
GCCGTCT4159.05061E-48.43367751
GCTGGGC4200.0094361517.499948539
TATGCCG5450.00166102847.06417148
CGTATGC6900.0028907116.086914546
TGCCGTC6350.0082202436.0629550
Produced by FastQC (version 0.11.5)