FastQCFastQC Report
Wed 31 Jul 2024
HKVNYDSXC_n01_CG_93.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVNYDSXC_n01_CG_93.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47046609
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA2334500.49621004565918875No Hit
ACACACACACACACACACACACACACACACACACACACACACACACACAC775100.16475151269669616No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT594430.1263491700326372No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG525850.11177213643601817No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)