FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n02_dpr79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n02_dpr79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34526
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTGTGC208.4145126E-568.9724668
CGTCTGC200.0072686451.8044310
GCCGCGA200.0072686451.8044315
GATGCTT200.0072686451.8044315
CGATCTA200.0072686451.8044369
CTCAGAT200.0072686451.8044311
CACATGA200.007310532551.7293526
TAACCAG200.007310532551.729355
CACAGTC200.007310532551.7293537
TCCAAGG200.007310532551.729352
AGAGCCC200.007310532551.7293528
GGTAGTC200.007310532551.729357
CAGTGCT306.1939965E-446.04837814
TATACAG306.2385545E-445.9816445
GGCTGGA350.00133235539.4128341
AGCGATC500.00759386727.62902869
GACGAGC1250.001876389516.57741769
GCCGACG2302.3765642E-615.01577769
CGACGAG1500.006316885413.81451468
TGCCGAC2651.0306168E-513.0325668
Produced by FastQC (version 0.11.5)