FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n02_dpr119.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n02_dpr119.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21237
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTTGC150.002323707369.013
GTTTGGG200.007260332351.7529
TCAAGTG200.007260332351.752
AGGGAGG200.007260332351.7522
GTGCTGA200.007260332351.756
AGTGCTG350.001318139439.4285745
CCGACGA658.37881E-426.53846269
GCCGACG1052.1473059E-523.00000269
CTGCCGA1605.082802E-821.562569
TGCCGAC1200.00141311217.2568
GCTGCCG2302.2977529E-615.00000168
GACGCTG2554.0081613E-714.88235365
CGCTGCC2352.8736904E-614.68085167
ACGCTGC2352.8736904E-614.68085166
TGACGCT2608.191979E-613.26923164
CTGACGC2802.4515146E-411.08928663
TCTGACG3055.408192E-410.18032762
Produced by FastQC (version 0.11.5)