FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n02_dpr107.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n02_dpr107.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11190318
Sequences flagged as poor quality0
Sequence length75
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGATC116250.023.41829569
GAGCGAT167750.022.09087869
GCGATCT73700.019.80359669
ACGAGCG332950.019.10966769
CGAGCGA249750.018.7614169
CTATACT22800.018.4601844
CTACACT41200.017.5008894
TAGACTG41650.017.4775475
GACGAGC451450.017.28073169
GTATAGG21150.016.9655131
TACACTG51600.016.781745
TATACTG23850.016.201035
CTAGACT38150.016.0966874
ATACCGT5800.016.0601186
TATACCG5650.015.8758825
TACACCG13000.015.6574735
GTCCTAC29150.015.623541
TCTATAC20950.015.4794273
TAGGACA36400.015.4488894
GTCCTAG46500.015.13635351
Produced by FastQC (version 0.11.5)