FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n02_dpr106.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n02_dpr106.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8971114
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGATC76600.023.5132369
GAGCGAT109950.021.33949969
CTACACT36800.018.7492964
GCGATCT50750.018.69679669
CTATACT21150.018.431934
ACGAGCG208600.018.26103269
CGAGCGA159350.018.05861969
TAGACTG34300.017.8027365
CTAGACT33400.017.146064
GTCCTAC27850.017.0948891
CCTATAC20750.016.9583993
TATACCG5300.016.924085
TATACTG19700.016.6366145
TAGGACA33200.016.6258814
CGATCTA28650.016.13803769
TACACTG46000.016.1245735
TACACCG10400.015.9226555
GTAGGAC29950.015.7807083
GACGAGC272000.015.48878269
TCTAGAC30400.015.3201473
Produced by FastQC (version 0.11.5)