FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87
Sequences flagged as poor quality0
Sequence length20
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGTGGGTTGTGTTGGTGG11.1494252873563218No Hit
GGTTTTGGCTTTGTGTTTGT11.1494252873563218No Hit
CTTTGGTTCTGTTGTTGGGG11.1494252873563218No Hit
TGTGTGTGATTTGTGGGGGG11.1494252873563218No Hit
CTGCTGGTCTGGGGGGGGGT11.1494252873563218No Hit
GGGTTTTGCGGGGGGGGGTG11.1494252873563218No Hit
GTTCGGTTGGGGGGGTTTTG11.1494252873563218No Hit
GGGTTTGGCTGTGGGGTTGG11.1494252873563218No Hit
AGTTTTTGGTTTTGTTGTTG11.1494252873563218No Hit
TCCTTGGTGTTTTGGGTGGT11.1494252873563218No Hit
GTTTTTGTTTGTGGGGTGGT11.1494252873563218No Hit
TGGTTGTTCGGGTTTGTGGT11.1494252873563218No Hit
GTGGTTGTGGTGTTGGTTTT11.1494252873563218No Hit
TTGCGTGTCTGGTGTGGGGG11.1494252873563218No Hit
CCCTTGGGCTGGGGGGTGTG11.1494252873563218No Hit
GGGCTGGGCTTGTTTGGTTG11.1494252873563218No Hit
GGTTTGGGTTGGTTGTGTGT11.1494252873563218No Hit
TTTGTGGTCTGTTGGTGGTG11.1494252873563218No Hit
GTTCTTGTCTGTTGTGGTGT11.1494252873563218No Hit
GTTTGGTTCTGTTTGTGTTG11.1494252873563218No Hit
GTGCTGTGTGTTGGGGTGGT11.1494252873563218No Hit
TTTGTTGGAGGTGTTTTGGT11.1494252873563218No Hit
TTCCTGGGCTTGGGGTGTTT11.1494252873563218No Hit
GGGGGGGGATTGGTGGTTGG11.1494252873563218No Hit
GGTTTTTTGGGTGGGTGTGG11.1494252873563218No Hit
GTGTTGTTCTGTGGTTTGGG11.1494252873563218No Hit
GGGGTTTTCGGGGTGGTTGG11.1494252873563218No Hit
GGGTTTGGCGGGGGGGGGGG11.1494252873563218No Hit
TTTCGTGTCGTTTTTTTTTT11.1494252873563218No Hit
TGTTGTGGGTTGGGGTGGGT11.1494252873563218No Hit
TGGGGGGTGTTGTGTTGTTG11.1494252873563218No Hit
GTCTTTTGTGGTGGGGGTTT11.1494252873563218No Hit
TGTGTGGGCGGGGGGGGGGT11.1494252873563218No Hit
GGTGTGGTATGTTTGTGGGG11.1494252873563218No Hit
GTTTTTGGGGTTTTGGTTGG11.1494252873563218No Hit
TCTTGGGGCTTTGGTGTTTT11.1494252873563218No Hit
CTTTTTTTCTTGGTGGTTTT11.1494252873563218No Hit
GGGGGGGGGGTTGGGTGGGG11.1494252873563218No Hit
TTTTTGGTCTGTGGGGGTGG11.1494252873563218No Hit
GCCGTGGGATGGTTTTGGGG11.1494252873563218No Hit
TCCTTTTTCTGGGTTTGTTT11.1494252873563218No Hit
CCCTGGGGGTGGGTTTTGTG11.1494252873563218No Hit
TTCGGGGGGTGTGTGTTTGG11.1494252873563218No Hit
GGGGTGGTTTGTGTGGGTTT11.1494252873563218No Hit
GGGGTGGTCGGGTTTGTGTT11.1494252873563218No Hit
TTTTTTTGATGTTGTTGTGT11.1494252873563218No Hit
GTTTTTTGGTGTGTGGGTTT11.1494252873563218No Hit
GTGCTGGTCGTTGTTTTGGG11.1494252873563218No Hit
GGGTTGGTGTGGGTGGGTGT11.1494252873563218No Hit
TTTGGTGTCGTGTTTGTGTT11.1494252873563218No Hit
CTGTTGTGGTGTGTGTGTTG11.1494252873563218No Hit
TTTTTTTTCTGGTGTTTTTG11.1494252873563218No Hit
GGGTGGTGCGGTGTGTTGTT11.1494252873563218No Hit
CGTGGTGGCGGGTTTGTGGG11.1494252873563218No Hit
GTTTGTTTTTGTGTGTTTTT11.1494252873563218No Hit
CGTTTTTTTTTTTTTTTGTT11.1494252873563218No Hit
GTGGGGGGTGTGGTGTTTGG11.1494252873563218No Hit
GTCGGTGTTTGTGGTTGGGT11.1494252873563218No Hit
TGTGTGTTCTTTGTTTTGGT11.1494252873563218No Hit
CTTGGTTTTTGTGGGGTTTG11.1494252873563218No Hit
GTGGGGTGGGGGTGTGGGTT11.1494252873563218No Hit
GGTGGTGGCGGGTTGTGGGG11.1494252873563218No Hit
CTTGTGTGCGTGGGGGTTGG11.1494252873563218No Hit
GGTTTTTTGTGTTTGTTGGT11.1494252873563218No Hit
GGGGTGGTGGGTTGTTTGTT11.1494252873563218No Hit
CTCTTGGGGTGTTTTGGTTT11.1494252873563218No Hit
TTTTTGTGCTTGGGTGGGGG11.1494252873563218No Hit
TGGTTTGTTGGTTTTTTGTT11.1494252873563218No Hit
CCTCTGTGCGGGTTTGGTGT11.1494252873563218No Hit
GTTTTTGGTTTTGTGGGTTT11.1494252873563218No Hit
GTTGTGGGTTGTTGGTTTTT11.1494252873563218No Hit
GTTTGTGGCTGTTTTTGTTG11.1494252873563218No Hit
TGTTTTGGTTGTGGTGTGGG11.1494252873563218No Hit
GTTTTGTTGTGTTGGTGTTT11.1494252873563218No Hit
TCGCTGTGCTGTTGGTGTTT11.1494252873563218No Hit
GTGTGTGTTGGTTGTTGTGT11.1494252873563218No Hit
GGTTTGTGCTTTTGTGTTGG11.1494252873563218No Hit
GTGGTGGTCTTGGGGTTTTT11.1494252873563218No Hit
CCTCGTGGCGTTTTTTGTTG11.1494252873563218No Hit
GGTTTTTGATGTGGTTGGGT11.1494252873563218No Hit
CTTTGGGTTTGGTTGGGGGT11.1494252873563218No Hit
GTGCTGTGGTTTTTGGGGGG11.1494252873563218No Hit
CTTGTTGGCTTTTTGGGGGG11.1494252873563218No Hit
GTTTGGGGTGGGGGTGGGTT11.1494252873563218No Hit
GTTGTTGGGTGTGTTTTTTT11.1494252873563218No Hit
GTGGTTTTGGGTTTGTGGTT11.1494252873563218No Hit
TGTGTTGGCTGTGTGTTTGT11.1494252873563218No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGTTTG50.013.99999910
GTTTGGT50.013.99999912
CTGGGCT50.013.9999994
GCTGGGC50.013.9999993
TGTTTGG50.013.99999911
GGCTGGG50.013.9999992
GGCTTGT50.013.9999997
GCTTGTT50.013.9999998
CTTGTTT50.013.9999999
TTTGGTT50.013.99999913
TGGGCTT50.013.9999995
TTGGTTG50.013.99999914
GGGCTTG50.013.9999996
GGGCTGG50.013.9999991
Produced by FastQC (version 0.11.5)