FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr58.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr58.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83
Sequences flagged as poor quality0
Sequence length20
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTTGGTTGTGGGGCGGG11.2048192771084338No Hit
GGTGTTTGAGGGTTGGTTTG11.2048192771084338No Hit
TGTTTTTGTGTTGGTTGGTT11.2048192771084338No Hit
CTGGTTTGTTGTGGGGGGGG11.2048192771084338No Hit
CGGTTGTGGGTGGGTTTGTG11.2048192771084338No Hit
TGTTTTTAGGGTGGGTTTGG11.2048192771084338No Hit
GTTTTGTTTTTGTTTTTTTT11.2048192771084338No Hit
GTGGTTGTTGTTTTTTTTGG11.2048192771084338No Hit
GGGTTGGGGTGGGGTTTGTG11.2048192771084338No Hit
CTTTTTTGCTTTGGTGTTTT11.2048192771084338No Hit
GGGGTGGGGGTTGGTTGGTG11.2048192771084338No Hit
AGGGTGTGGTGGGGGTGTGG11.2048192771084338No Hit
GGTGGGGGAGGGGGGGGGGT11.2048192771084338No Hit
CGTGTGGGGGGTGTGGGTGG11.2048192771084338No Hit
GGGGTTTTGTGTTTGTTGGG11.2048192771084338No Hit
ATTGTTGTGGTGTGGTGTGG11.2048192771084338No Hit
TTGCTTGGGTGTTGGTTTGT11.2048192771084338No Hit
TGTTTTGTCTGTGTTTTTTG11.2048192771084338No Hit
GGGTGGGGGGTGGGTGGTTT11.2048192771084338No Hit
TGGGGGGTCTGTGGTGGTGG11.2048192771084338No Hit
GGTGTTGTCGGTGGTGGTGG11.2048192771084338No Hit
GGGGGTGTATGGTTGTTTTT11.2048192771084338No Hit
AGTTTGGTCGGTGTGTTGGG11.2048192771084338No Hit
GGTCTGGTGTGGGGGGGTGG11.2048192771084338No Hit
TCCCTGGGTGGGGGGTGTGG11.2048192771084338No Hit
GGTGTGTGCTTTTGGTGGGG11.2048192771084338No Hit
GTGGGGGGGGGGGTTGTGTG11.2048192771084338No Hit
GTGGGTGGGGTGGGGGTGTG11.2048192771084338No Hit
CGGGTTTTTTTTTGGTGTGG11.2048192771084338No Hit
GGCTGGGGTGTTGTTGTTGG11.2048192771084338No Hit
TTTGTTTTCTTTGGGTGCTT11.2048192771084338No Hit
GGCCGGTGGGTGGGGGTGTT11.2048192771084338No Hit
GTGTTTTGTTGTTGTTGTTT11.2048192771084338No Hit
GGGGTGGGGGTGGTTGTGGG11.2048192771084338No Hit
GTGGTGGGTGGGTGGTTGTT11.2048192771084338No Hit
GTGTGTTTGTGGTGGTTGTT11.2048192771084338No Hit
GTGGTTGGGGGGGGGGGGGG11.2048192771084338No Hit
CTCCGGTGGTGGGGGGGTGT11.2048192771084338No Hit
GGTGGTTTGTTGTGTGTGTG11.2048192771084338No Hit
GTGTTTGTGTGTGTGTGTGT11.2048192771084338No Hit
GGGGGTGTGTTTTTTGTTTG11.2048192771084338No Hit
CGTGTGGGGGGTGGTTTGGG11.2048192771084338No Hit
GGGGTGGTCGTGGTTTGGTG11.2048192771084338No Hit
CGGTGGTGATGGGGGGGGTG11.2048192771084338No Hit
GGTGTTGTCTGTGGGTGTGG11.2048192771084338No Hit
GTTGGGGTGGTTTTGGTGGT11.2048192771084338No Hit
GGGGGGGGCGGTGGGGGTGT11.2048192771084338No Hit
TGTGGTGGCTGGGTGTTTGT11.2048192771084338No Hit
AGGGTTGGTGGGGGTTGGTG11.2048192771084338No Hit
GGGGGGTGGTGGGGTGGGTG11.2048192771084338No Hit
CTTCTTTTGGTTGGGTTGTG11.2048192771084338No Hit
GTTTTTGGGGGGGGTTGTTG11.2048192771084338No Hit
CTTGTGTGTTGGTGTGGGGT11.2048192771084338No Hit
GTGTTGGGTGTGGGGTTGTT11.2048192771084338No Hit
GGGTTTGGTGGGTGGTTGGT11.2048192771084338No Hit
GTTGTTGTCTGGGTGTTTTT11.2048192771084338No Hit
GGTGTGTTCTGGTGTTGGTG11.2048192771084338No Hit
GTTGTGGTGTTTGTTGTTTT11.2048192771084338No Hit
GGTGTGGTGGGGTGGGGGGG11.2048192771084338No Hit
GTTCTGTGTTGGGTTTGTTG11.2048192771084338No Hit
GGGTTTGGGTGTGGGTTGGT11.2048192771084338No Hit
CTGGTGGTCTGGTGTTTGGT11.2048192771084338No Hit
GGTTGTGGCGGTGGGTGGTG11.2048192771084338No Hit
CGTTGTTGGTGTGTTTGTGT11.2048192771084338No Hit
TTGTTTTGTTTGTGGTTGTT11.2048192771084338No Hit
TCCGTGGGCGGTGGTGGGTG11.2048192771084338No Hit
GGGTGTGGCGGGGGGTGTGG11.2048192771084338No Hit
GTTTTTGTGTTTGTGTGTGG11.2048192771084338No Hit
GGGGTTGTGGTGGTGGGGTG11.2048192771084338No Hit
GGGTTGGTGTGTGGGTTGTT11.2048192771084338No Hit
TTGCTGGTCTGGGGTTGTGT11.2048192771084338No Hit
TGGTTGGTCTGTGGTGGTGG11.2048192771084338No Hit
CGTGTGGGGGTGGGGTGGGT11.2048192771084338No Hit
GGGTTTTGCTGTGGTTTGTG11.2048192771084338No Hit
CTGTTTTTCTTTTGGGTTTG11.2048192771084338No Hit
GTGGTGGGCGGTGTTTTGGG11.2048192771084338No Hit
GGTTTGTGGTGTTTGGGTTT11.2048192771084338No Hit
GTGCTTGGGTGGGTTTTGTG11.2048192771084338No Hit
GTGTTGTTGTGGGGGGGGGG11.2048192771084338No Hit
GCCCTTGTCTGGGGGGTGGT11.2048192771084338No Hit
TTGGTGGTGTGGGTTGTTTG11.2048192771084338No Hit
GTTTGTGTCGGTGGGGGTGG11.2048192771084338No Hit
GGCCTGTGTTGTTGTTGGTT11.2048192771084338No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTTGTG50.013.9999993
GTTTGTG50.013.9999999
GTGTTTG50.013.9999997
TTTTTGT50.013.9999992
TGTTTGT50.013.9999998
GTTTTTG50.013.9999991
TTGTGTT50.013.9999995
TTGTGTG50.013.99999911
GTGTGTG50.013.99999913
TGTGTTT50.013.9999996
TGTGTGT50.013.99999912
TGTGTGG50.013.99999914
TTTGTGT100.06.99999954
Produced by FastQC (version 0.11.5)