FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr56.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr56.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length20
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGTGGTGGGTTTTTTGG15.263157894736842No Hit
GGTTGGGGGTGTGGGGTGGG15.263157894736842No Hit
GGGGTGTGCGGGGGGGGGGG15.263157894736842No Hit
GTTTGGGGGTGTGGTGGGGG15.263157894736842No Hit
CGTTGGGGGTGGTGGGGGGT15.263157894736842No Hit
GTGGTGTGGTGTGTGTTTGG15.263157894736842No Hit
GTGGGGTGGGTTGGGTTGGT15.263157894736842No Hit
GTGTTGTTGTGTTGTTGGTT15.263157894736842No Hit
GGGTGTTGGGGGGGTGGGGT15.263157894736842No Hit
GGGGTGTGGTGGTTGTTGGT15.263157894736842No Hit
GGTGTTGTATGGGGTTTGGT15.263157894736842No Hit
CTGGTGTTGGGGGGGGGGGG15.263157894736842No Hit
GTGCGGGGCTTTTTGGTGTG15.263157894736842No Hit
ATTTTTGTGTTGTGTTGGGG15.263157894736842No Hit
CTTGTGGTAGTGGGTGGGGT15.263157894736842No Hit
GTGTTGTGGTGGGGTGTGTT15.263157894736842No Hit
CGTTGTTTAGGTTTATTTTT15.263157894736842No Hit
GGGTGGGTGTGGTGGGTTGG15.263157894736842No Hit
GGGTGTTTATTTTTGTGTTT15.263157894736842No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)