FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr48.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr48.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17
Sequences flagged as poor quality0
Sequence length20
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTGTGGCTGGGTTGTTTT15.88235294117647No Hit
GTGGTGGGATGTTGTTTTGT15.88235294117647No Hit
GTTGTGTGGTGGGTTGTGGG15.88235294117647No Hit
GGGGGGTTCTGTTGTTTTTG15.88235294117647No Hit
GTGTTGGGCTTGGTGGGGTT15.88235294117647No Hit
GTTTTGGGGTGGGTTGGTGG15.88235294117647No Hit
GTTGTGTTTGGGTTGTTGTT15.88235294117647No Hit
TGTGTGGGGTGGGTTGGGGG15.88235294117647No Hit
CTTGTGTTGTGTTGGTGTGT15.88235294117647No Hit
CTTTTTGGTTGTTTTGTTGT15.88235294117647No Hit
GTGGTGGGGGTGTGTTGTTG15.88235294117647No Hit
GGTGTGGTCGTTGTGGTGGG15.88235294117647No Hit
CCTCGGTGCTTTGTGGGTTT15.88235294117647No Hit
ATGCTGGTCTGGGTGGTTGG15.88235294117647No Hit
CGGGTTGGTTGTTGGTGTGT15.88235294117647No Hit
CTTTGTTTAAGGGTTTGTTG15.88235294117647No Hit
ATGGGGGTGGTGGGTGTTGG15.88235294117647No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)