FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr42.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr42.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Sequences flagged as poor quality0
Sequence length20
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTTTCGGGTTGGTTTT13.8461538461538463No Hit
GTGGTGGTGGGTGGGTGGGT13.8461538461538463No Hit
GTGTGTTGTGGTTTGTGTTG13.8461538461538463No Hit
GGTTTTTTGTTTTGTGGTTG13.8461538461538463No Hit
GTGGGGGTTTGTGGTTGGGT13.8461538461538463No Hit
TTTTTTGTGTGTGGTTTGTT13.8461538461538463No Hit
GTTGTGGTCTTTTGTGTGGG13.8461538461538463No Hit
GCGTTGTGCGGGTGGGGTTG13.8461538461538463No Hit
GGGGGTGTGGGTGTGGGGGG13.8461538461538463No Hit
CCTCGTGGCTGGGGTTGGGG13.8461538461538463No Hit
CGTTGTGGTGGGTGTTGGGG13.8461538461538463No Hit
CCCTGGTTGTTGTTGGTGTT13.8461538461538463No Hit
GTTGTTGTTGGTGTTGGTTG13.8461538461538463No Hit
GGTTTTTGTGGGTGGGTGTG13.8461538461538463No Hit
CCCATTGGCTGTTGGTGGGG13.8461538461538463No Hit
GTGTGGTGTGTTGGGTGTTG13.8461538461538463No Hit
GTTTTTGTGGTTTGGTTTGT13.8461538461538463No Hit
GTGTGTTTCTTTGTTTTTTG13.8461538461538463No Hit
GTGTTGTTATTGGGTGGTGG13.8461538461538463No Hit
GGTGTGTGGTGGTGTGTGGT13.8461538461538463No Hit
GGTGTGTTCTTGTTTGTTGG13.8461538461538463No Hit
TGGGTGTTCTTGTGGTTTTT13.8461538461538463No Hit
GTGTTTGGCGTGTGTTTTTG13.8461538461538463No Hit
GGTGTTTGCTGGGGTGTTGT13.8461538461538463No Hit
TCCTTTTTCGGTTTTGGGTG13.8461538461538463No Hit
CTTTTGTGCGGTGGGGTGGT13.8461538461538463No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)