FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr40.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr40.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length20
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTTGTCTTTTGTGTGGG111.11111111111111No Hit
GTGGGGTGCGTGTTGTTTTT111.11111111111111No Hit
CTGTGTGTGGTGTTTGGGGG111.11111111111111No Hit
CCTGGTGTGGGTGGGTTTTT111.11111111111111No Hit
GGTGTTTGGTTTTGTTTGGG111.11111111111111No Hit
GTGTTTTGGTGGTTGGTTTG111.11111111111111No Hit
TTTTTTGTGTGGGGTGGTTT111.11111111111111No Hit
GTGGGTTGAGTGGTGTGTGG111.11111111111111No Hit
GTGGTTGTTTGGGGTTTTTG111.11111111111111No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)