FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr36.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr36.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1893
Sequences flagged as poor quality0
Sequence length20
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTGTGTGTGTGTGTGT60.31695721077654515No Hit
GTGTGTGTGTGTGTGTGTTT20.10565240359218173No Hit
TGTGGGTGGGGGGGGGGGGT20.10565240359218173No Hit
GGGGGGGGGGGGGGGGGGTG20.10565240359218173No Hit
GGGGTTTGGTTTGTTTTTTT20.10565240359218173No Hit
GGGGGGGGGGGGGGGGGGGG20.10565240359218173No Hit
GGGGTTGGTGGTGTGGTGGG20.10565240359218173No Hit
GGGGTTGGGGTTGTTGGGGT20.10565240359218173No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)