FastQCFastQC Report
Mon 16 Mar 2020
HKVH7DRXX_n01_dpr33.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKVH7DRXX_n01_dpr33.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23
Sequences flagged as poor quality0
Sequence length20
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGTGGGTTGGTGTTGGGT14.3478260869565215No Hit
GGGGTTGGTTGTGGTGTGTG14.3478260869565215No Hit
GTTGTTTTAGAACTGTTTGA14.3478260869565215No Hit
GTTGTTTGGTTTGTGTTTTG14.3478260869565215No Hit
CCTCGTTGCTTGGGTGGTTG14.3478260869565215No Hit
GGTGTTGTTTGGTGGTTGTT14.3478260869565215No Hit
GTGGGTGTGGGGGTTTGGTT14.3478260869565215No Hit
GGGTTGTTGGGGGTTTGGGT14.3478260869565215No Hit
CTCCGGTTTGTTGTTGGTGG14.3478260869565215No Hit
CTTGTGTGTGGTTGTTGTTG14.3478260869565215No Hit
GGGGGGTTGTGTTGGTTTGT14.3478260869565215No Hit
GTGGTTGTGTTTGTTGGGTT14.3478260869565215No Hit
GTGTGTGTCGGTGTGTGTGG14.3478260869565215No Hit
CGTGGGGTGGGGGGGGGGGG14.3478260869565215No Hit
GGGTTTTGCTTTGTTTGGGT14.3478260869565215No Hit
GGTGTGGGCTGGGGGTTGTT14.3478260869565215No Hit
GGTGTTGGGTGTGGGTGTGT14.3478260869565215No Hit
GGTGTTTGATGGTTTTTTTT14.3478260869565215No Hit
CTTGGTGGCGGTTGGGGTGG14.3478260869565215No Hit
GGGTTTTGGTGTTTTGTTGT14.3478260869565215No Hit
GTGGTGTTAGTTGTGTTTTT14.3478260869565215No Hit
GGTGTTGTGGTGGTTTTTTT14.3478260869565215No Hit
GTGGGTTTCTTGTGTGGTGG14.3478260869565215No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)