[2023-01-25 19:10:41,367] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-01-25 19:10:41,367] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-01-25 19:10:41,367] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-01-25 19:10:41,369] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-01-25 19:10:41,370] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-01-25 19:10:41,370] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKV2TDRX2/merged [2023-01-25 19:10:41,908] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-01-25 19:10:41,909] multiqc [INFO ] This is MultiQC v1.9 [2023-01-25 19:10:41,909] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKV2TDRX2/merged [2023-01-25 19:10:41,909] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HKV2TDRX2/merged [2023-01-25 19:10:41,909] multiqc [INFO ] Template : default [2023-01-25 19:10:41,909] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-01-25 19:10:41,909] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HKV2TDRX2/merged [2023-01-25 19:10:41,909] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-01-25 19:10:41,909] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-29514478/tmpkj7u0e00 [2023-01-25 19:10:42,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br234_fastqc.html [2023-01-25 19:10:42,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br234_fastqc.html [2023-01-25 19:10:42,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br229_fastqc.html [2023-01-25 19:10:42,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br229_fastqc.html [2023-01-25 19:10:42,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br229_fastqc.html [2023-01-25 19:10:42,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br229_fastqc.html [2023-01-25 19:10:42,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br230_fastqc.html [2023-01-25 19:10:42,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br230_fastqc.html [2023-01-25 19:10:42,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br212_fastqc.html [2023-01-25 19:10:42,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br212_fastqc.html [2023-01-25 19:10:42,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br243_fastqc.html [2023-01-25 19:10:42,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br243_fastqc.html [2023-01-25 19:10:42,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br214_fastqc.html [2023-01-25 19:10:42,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br214_fastqc.html [2023-01-25 19:10:42,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br219_fastqc.html [2023-01-25 19:10:42,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br219_fastqc.html [2023-01-25 19:10:42,475] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br232_fastqc.html [2023-01-25 19:10:42,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br232_fastqc.html [2023-01-25 19:10:42,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br228_fastqc.html [2023-01-25 19:10:42,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br228_fastqc.html [2023-01-25 19:10:42,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br235_fastqc.html [2023-01-25 19:10:42,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br235_fastqc.html [2023-01-25 19:10:42,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br244_fastqc.html [2023-01-25 19:10:42,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br244_fastqc.html [2023-01-25 19:10:42,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br221_fastqc.html [2023-01-25 19:10:42,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br221_fastqc.html [2023-01-25 19:10:42,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br213_fastqc.html [2023-01-25 19:10:42,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br213_fastqc.html [2023-01-25 19:10:42,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br223_fastqc.html [2023-01-25 19:10:42,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br223_fastqc.html [2023-01-25 19:10:42,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br232_fastqc.html [2023-01-25 19:10:42,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br232_fastqc.html [2023-01-25 19:10:42,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br217_fastqc.html [2023-01-25 19:10:42,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br217_fastqc.html [2023-01-25 19:10:42,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br220_fastqc.html [2023-01-25 19:10:42,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br220_fastqc.html [2023-01-25 19:10:43,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br225_fastqc.html [2023-01-25 19:10:43,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br225_fastqc.html [2023-01-25 19:10:43,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br216_fastqc.html [2023-01-25 19:10:43,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br216_fastqc.html [2023-01-25 19:10:43,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br231_fastqc.html [2023-01-25 19:10:43,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br231_fastqc.html [2023-01-25 19:10:43,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br224_fastqc.html [2023-01-25 19:10:43,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br224_fastqc.html [2023-01-25 19:10:43,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br239_fastqc.html [2023-01-25 19:10:43,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br239_fastqc.html [2023-01-25 19:10:43,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br238_fastqc.html [2023-01-25 19:10:43,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br238_fastqc.html [2023-01-25 19:10:43,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br240_fastqc.html [2023-01-25 19:10:43,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br240_fastqc.html [2023-01-25 19:10:43,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br224_fastqc.html [2023-01-25 19:10:43,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br224_fastqc.html [2023-01-25 19:10:43,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br244_fastqc.html [2023-01-25 19:10:43,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br244_fastqc.html [2023-01-25 19:10:43,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br236_fastqc.html [2023-01-25 19:10:43,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br236_fastqc.html [2023-01-25 19:10:43,655] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br220_fastqc.html [2023-01-25 19:10:43,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br220_fastqc.html [2023-01-25 19:10:43,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br239_fastqc.html [2023-01-25 19:10:43,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br239_fastqc.html [2023-01-25 19:10:43,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br247_fastqc.html [2023-01-25 19:10:43,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br247_fastqc.html [2023-01-25 19:10:43,788] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br215_fastqc.html [2023-01-25 19:10:43,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br215_fastqc.html [2023-01-25 19:10:43,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br247_fastqc.html [2023-01-25 19:10:43,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br247_fastqc.html [2023-01-25 19:10:43,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br231_fastqc.html [2023-01-25 19:10:43,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br231_fastqc.html [2023-01-25 19:10:43,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br227_fastqc.html [2023-01-25 19:10:43,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br227_fastqc.html [2023-01-25 19:10:43,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br240_fastqc.html [2023-01-25 19:10:43,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br240_fastqc.html [2023-01-25 19:10:44,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br235_fastqc.html [2023-01-25 19:10:44,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br235_fastqc.html [2023-01-25 19:10:44,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br213_fastqc.html [2023-01-25 19:10:44,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br213_fastqc.html [2023-01-25 19:10:44,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br218_fastqc.html [2023-01-25 19:10:44,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br218_fastqc.html [2023-01-25 19:10:44,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br222_fastqc.html [2023-01-25 19:10:44,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br222_fastqc.html [2023-01-25 19:10:44,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br230_fastqc.html [2023-01-25 19:10:44,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br230_fastqc.html [2023-01-25 19:10:44,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br237_fastqc.html [2023-01-25 19:10:44,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br237_fastqc.html [2023-01-25 19:10:44,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br237_fastqc.html [2023-01-25 19:10:44,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br237_fastqc.html [2023-01-25 19:10:44,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_undetermined_fastqc.html [2023-01-25 19:10:44,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_undetermined_fastqc.html [2023-01-25 19:10:44,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br241_fastqc.html [2023-01-25 19:10:44,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br241_fastqc.html [2023-01-25 19:10:44,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br215_fastqc.html [2023-01-25 19:10:44,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br215_fastqc.html [2023-01-25 19:10:44,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br233_fastqc.html [2023-01-25 19:10:44,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br233_fastqc.html [2023-01-25 19:10:44,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br246_fastqc.html [2023-01-25 19:10:44,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br246_fastqc.html [2023-01-25 19:10:44,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br234_fastqc.html [2023-01-25 19:10:44,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br234_fastqc.html [2023-01-25 19:10:44,646] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br217_fastqc.html [2023-01-25 19:10:44,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br217_fastqc.html [2023-01-25 19:10:44,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br212_fastqc.html [2023-01-25 19:10:44,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br212_fastqc.html [2023-01-25 19:10:44,770] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br242_fastqc.html [2023-01-25 19:10:44,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br242_fastqc.html [2023-01-25 19:10:44,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br245_fastqc.html [2023-01-25 19:10:44,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br245_fastqc.html [2023-01-25 19:10:44,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br226_fastqc.html [2023-01-25 19:10:44,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br226_fastqc.html [2023-01-25 19:10:44,922] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br238_fastqc.html [2023-01-25 19:10:44,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br238_fastqc.html [2023-01-25 19:10:44,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br225_fastqc.html [2023-01-25 19:10:44,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br225_fastqc.html [2023-01-25 19:10:45,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br242_fastqc.html [2023-01-25 19:10:45,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br242_fastqc.html [2023-01-25 19:10:45,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br227_fastqc.html [2023-01-25 19:10:45,092] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br227_fastqc.html [2023-01-25 19:10:45,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br221_fastqc.html [2023-01-25 19:10:45,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br221_fastqc.html [2023-01-25 19:10:45,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_undetermined_fastqc.html [2023-01-25 19:10:45,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_undetermined_fastqc.html [2023-01-25 19:10:45,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br245_fastqc.html [2023-01-25 19:10:45,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br245_fastqc.html [2023-01-25 19:10:45,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br218_fastqc.html [2023-01-25 19:10:45,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br218_fastqc.html [2023-01-25 19:10:45,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br214_fastqc.html [2023-01-25 19:10:45,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br214_fastqc.html [2023-01-25 19:10:45,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br246_fastqc.html [2023-01-25 19:10:45,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br246_fastqc.html [2023-01-25 19:10:45,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br226_fastqc.html [2023-01-25 19:10:45,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br226_fastqc.html [2023-01-25 19:10:45,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br222_fastqc.html [2023-01-25 19:10:45,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br222_fastqc.html [2023-01-25 19:10:45,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br241_fastqc.html [2023-01-25 19:10:45,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br241_fastqc.html [2023-01-25 19:10:45,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br233_fastqc.html [2023-01-25 19:10:45,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br233_fastqc.html [2023-01-25 19:10:45,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br243_fastqc.html [2023-01-25 19:10:45,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br243_fastqc.html [2023-01-25 19:10:45,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br228_fastqc.html [2023-01-25 19:10:45,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br228_fastqc.html [2023-01-25 19:10:45,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br223_fastqc.html [2023-01-25 19:10:45,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br223_fastqc.html [2023-01-25 19:10:45,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br236_fastqc.html [2023-01-25 19:10:45,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br236_fastqc.html [2023-01-25 19:10:45,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br216_fastqc.html [2023-01-25 19:10:45,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n01_br216_fastqc.html [2023-01-25 19:10:45,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br219_fastqc.html [2023-01-25 19:10:45,925] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKV2TDRX2_n02_br219_fastqc.html [2023-01-25 19:10:46,277] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-01-25 19:10:46,278] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-01-25 19:10:46,302] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 37 samples (table) [2023-01-25 19:10:46,303] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-01-25 19:10:46,313] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-01-25 19:10:46,317] multiqc [DEBUG ] No samples found: conpair [2023-01-25 19:10:46,322] multiqc [DEBUG ] No samples found: peddy [2023-01-25 19:10:46,327] multiqc [DEBUG ] No samples found: somalier [2023-01-25 19:10:46,331] multiqc [DEBUG ] No samples found: methylQA [2023-01-25 19:10:46,339] multiqc [DEBUG ] No samples found: mosdepth [2023-01-25 19:10:46,343] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-01-25 19:10:46,346] multiqc [DEBUG ] No samples found: qualimap [2023-01-25 19:10:46,351] multiqc [DEBUG ] No samples found: preseq [2023-01-25 19:10:46,356] multiqc [DEBUG ] No samples found: quast [2023-01-25 19:10:46,361] multiqc [DEBUG ] No samples found: qorts [2023-01-25 19:10:46,365] multiqc [DEBUG ] No samples found: rna_seqc [2023-01-25 19:10:46,371] multiqc [DEBUG ] No samples found: rockhopper [2023-01-25 19:10:46,375] multiqc [DEBUG ] No samples found: rsem [2023-01-25 19:10:46,385] multiqc [DEBUG ] No samples found: rseqc [2023-01-25 19:10:46,389] multiqc [DEBUG ] No samples found: busco [2023-01-25 19:10:46,394] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-01-25 19:10:46,398] multiqc [DEBUG ] No samples found: disambiguate [2023-01-25 19:10:46,402] multiqc [DEBUG ] No samples found: supernova [2023-01-25 19:10:46,414] multiqc [DEBUG ] No samples found: deeptools [2023-01-25 19:10:46,419] multiqc [DEBUG ] No samples found: sargasso [2023-01-25 19:10:46,424] multiqc [DEBUG ] No samples found: verifybamid [2023-01-25 19:10:46,428] multiqc [DEBUG ] No samples found: mirtrace [2023-01-25 19:10:46,433] multiqc [DEBUG ] No samples found: happy [2023-01-25 19:10:46,439] multiqc [DEBUG ] No samples found: mirtop [2023-01-25 19:10:46,445] multiqc [DEBUG ] No samples found: homer [2023-01-25 19:10:46,449] multiqc [DEBUG ] No samples found: macs2 [2023-01-25 19:10:46,453] multiqc [DEBUG ] No samples found: theta2 [2023-01-25 19:10:46,457] multiqc [DEBUG ] No samples found: snpeff [2023-01-25 19:10:46,464] multiqc [DEBUG ] No samples found: gatk [2023-01-25 19:10:46,468] multiqc [DEBUG ] No samples found: htseq [2023-01-25 19:10:46,473] multiqc [DEBUG ] No samples found: bcftools [2023-01-25 19:10:46,478] multiqc [DEBUG ] No samples found: featureCounts [2023-01-25 19:10:46,484] multiqc [DEBUG ] No samples found: fgbio [2023-01-25 19:10:46,496] multiqc [DEBUG ] No samples found: dragen [2023-01-25 19:10:46,501] multiqc [DEBUG ] No samples found: dedup [2023-01-25 19:10:46,505] multiqc [DEBUG ] No samples found: damageprofiler [2023-01-25 19:10:46,526] multiqc [DEBUG ] No samples found: biobambam2 [2023-01-25 19:10:46,530] multiqc [DEBUG ] No samples found: mtnucratio [2023-01-25 19:10:46,533] multiqc [DEBUG ] No samples found: picard [2023-01-25 19:10:46,537] multiqc [DEBUG ] No samples found: prokka [2023-01-25 19:10:46,541] multiqc [DEBUG ] No samples found: samblaster [2023-01-25 19:10:46,548] multiqc [DEBUG ] No samples found: samtools [2023-01-25 19:10:46,553] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-01-25 19:10:46,558] multiqc [DEBUG ] No samples found: bamtools [2023-01-25 19:10:46,562] multiqc [DEBUG ] No samples found: jellyfish [2023-01-25 19:10:46,568] multiqc [DEBUG ] No samples found: vcftools [2023-01-25 19:10:46,573] multiqc [DEBUG ] No samples found: longranger [2023-01-25 19:10:46,578] multiqc [DEBUG ] No samples found: stacks [2023-01-25 19:10:46,582] multiqc [DEBUG ] No samples found: varscan2 [2023-01-25 19:10:46,595] multiqc [DEBUG ] No samples found: bbmap [2023-01-25 19:10:46,599] multiqc [DEBUG ] No samples found: bismark [2023-01-25 19:10:46,605] multiqc [DEBUG ] No samples found: biscuit [2023-01-25 19:10:46,609] multiqc [DEBUG ] No samples found: hicexplorer [2023-01-25 19:10:46,614] multiqc [DEBUG ] No samples found: hicup [2023-01-25 19:10:46,618] multiqc [DEBUG ] No samples found: hicpro [2023-01-25 19:10:46,623] multiqc [DEBUG ] No samples found: salmon [2023-01-25 19:10:46,627] multiqc [DEBUG ] No samples found: kallisto [2023-01-25 19:10:46,632] multiqc [DEBUG ] No samples found: slamdunk [2023-01-25 19:10:46,636] multiqc [DEBUG ] No samples found: star [2023-01-25 19:10:46,640] multiqc [DEBUG ] No samples found: hisat2 [2023-01-25 19:10:46,645] multiqc [DEBUG ] No samples found: tophat [2023-01-25 19:10:46,649] multiqc [DEBUG ] No samples found: bowtie2 [2023-01-25 19:10:46,653] multiqc [DEBUG ] No samples found: bowtie1 [2023-01-25 19:10:46,658] multiqc [DEBUG ] No samples found: snpsplit [2023-01-25 19:10:46,662] multiqc [DEBUG ] No samples found: kat [2023-01-25 19:10:46,666] multiqc [DEBUG ] No samples found: leehom [2023-01-25 19:10:46,670] multiqc [DEBUG ] No samples found: adapterRemoval [2023-01-25 19:10:46,675] multiqc [DEBUG ] No samples found: clipandmerge [2023-01-25 19:10:46,679] multiqc [DEBUG ] No samples found: cutadapt [2023-01-25 19:10:46,683] multiqc [DEBUG ] No samples found: flexbar [2023-01-25 19:10:46,688] multiqc [DEBUG ] No samples found: kaiju [2023-01-25 19:10:46,692] multiqc [DEBUG ] No samples found: kraken [2023-01-25 19:10:46,697] multiqc [DEBUG ] No samples found: malt [2023-01-25 19:10:46,701] multiqc [DEBUG ] No samples found: trimmomatic [2023-01-25 19:10:46,705] multiqc [DEBUG ] No samples found: sickle [2023-01-25 19:10:46,710] multiqc [DEBUG ] No samples found: skewer [2023-01-25 19:10:46,714] multiqc [DEBUG ] No samples found: sortmerna [2023-01-25 19:10:46,718] multiqc [DEBUG ] No samples found: biobloomtools [2023-01-25 19:10:46,723] multiqc [DEBUG ] No samples found: fastq_screen [2023-01-25 19:10:46,727] multiqc [DEBUG ] No samples found: afterqc [2023-01-25 19:10:46,732] multiqc [DEBUG ] No samples found: fastp [2023-01-25 19:10:49,365] multiqc.modules.fastqc.fastqc [INFO ] Found 74 reports [2023-01-25 19:10:49,920] multiqc [DEBUG ] No samples found: pycoqc [2023-01-25 19:10:49,925] multiqc [DEBUG ] No samples found: minionqc [2023-01-25 19:10:49,929] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-01-25 19:10:49,934] multiqc [DEBUG ] No samples found: clusterflow [2023-01-25 19:10:49,939] multiqc [DEBUG ] No samples found: bcl2fastq [2023-01-25 19:10:49,943] multiqc [DEBUG ] No samples found: interop [2023-01-25 19:10:49,948] multiqc [DEBUG ] No samples found: ivar [2023-01-25 19:10:49,952] multiqc [DEBUG ] No samples found: flash [2023-01-25 19:10:49,956] multiqc [DEBUG ] No samples found: seqyclean [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-01-25 19:10:49,957] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-01-25 19:10:50,043] multiqc [INFO ] Compressing plot data [2023-01-25 19:10:51,197] multiqc [INFO ] Report : multiqc_report.html [2023-01-25 19:10:51,197] multiqc [INFO ] Data : multiqc_data [2023-01-25 19:10:51,197] multiqc [DEBUG ] Moving data file from '/state/partition1/job-29514478/tmpkj7u0e00/multiqc_data' to '/scratch/gencore/logs/html/HKV2TDRX2/merged/multiqc_data' [2023-01-25 19:10:51,328] multiqc [INFO ] MultiQC complete