[2022-11-12 07:36:09,181] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2022-11-12 07:36:09,181] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2022-11-12 07:36:09,181] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2022-11-12 07:36:09,182] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2022-11-12 07:36:09,182] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2022-11-12 07:36:09,182] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKTMWDRX2/merged
[2022-11-12 07:36:09,663] multiqc [WARNING] MultiQC Version v1.13 now available!
[2022-11-12 07:36:09,663] multiqc [INFO ] This is MultiQC v1.9
[2022-11-12 07:36:09,663] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKTMWDRX2/merged
[2022-11-12 07:36:09,663] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HKTMWDRX2/merged
[2022-11-12 07:36:09,663] multiqc [INFO ] Template : default
[2022-11-12 07:36:09,663] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2022-11-12 07:36:09,663] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HKTMWDRX2/merged
[2022-11-12 07:36:09,663] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2022-11-12 07:36:09,663] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-26929629/tmp0767z_e0
[2022-11-12 07:36:09,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OCB_fastqc.html
[2022-11-12 07:36:09,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OCB_fastqc.html
[2022-11-12 07:36:09,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:09,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:09,799] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:09,799] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:09,799] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:09,799] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:09,799] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:09,876] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-11-12 07:36:13,022] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WDB_fastqc.html
[2022-11-12 07:36:13,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WDB_fastqc.html
[2022-11-12 07:36:13,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OZB_fastqc.html
[2022-11-12 07:36:13,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OZB_fastqc.html
[2022-11-12 07:36:13,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OCA_fastqc.html
[2022-11-12 07:36:13,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OCA_fastqc.html
[2022-11-12 07:36:13,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WCB_fastqc.html
[2022-11-12 07:36:13,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WCB_fastqc.html
[2022-11-12 07:36:13,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_ODB_fastqc.html
[2022-11-12 07:36:13,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_ODB_fastqc.html
[2022-11-12 07:36:13,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WZA_fastqc.html
[2022-11-12 07:36:13,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WZA_fastqc.html
[2022-11-12 07:36:13,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OZA_fastqc.html
[2022-11-12 07:36:13,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_OZA_fastqc.html
[2022-11-12 07:36:13,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WCA_fastqc.html
[2022-11-12 07:36:13,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WCA_fastqc.html
[2022-11-12 07:36:13,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_ODA_fastqc.html
[2022-11-12 07:36:13,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_ODA_fastqc.html
[2022-11-12 07:36:13,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WDA_fastqc.html
[2022-11-12 07:36:13,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WDA_fastqc.html
[2022-11-12 07:36:13,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_undetermined_fastqc.html
[2022-11-12 07:36:13,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_undetermined_fastqc.html
[2022-11-12 07:36:13,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WZB_fastqc.html
[2022-11-12 07:36:13,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTMWDRX2_n01_WZB_fastqc.html
[2022-11-12 07:36:13,840] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2022-11-12 07:36:13,841] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2022-11-12 07:36:13,856] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2022-11-12 07:36:13,857] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2022-11-12 07:36:13,864] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 13 samples (table)
[2022-11-12 07:36:13,867] multiqc [DEBUG ] No samples found: conpair
[2022-11-12 07:36:13,870] multiqc [DEBUG ] No samples found: peddy
[2022-11-12 07:36:13,873] multiqc [DEBUG ] No samples found: somalier
[2022-11-12 07:36:13,876] multiqc [DEBUG ] No samples found: methylQA
[2022-11-12 07:36:13,880] multiqc [DEBUG ] No samples found: mosdepth
[2022-11-12 07:36:13,883] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2022-11-12 07:36:13,886] multiqc [DEBUG ] No samples found: qualimap
[2022-11-12 07:36:13,889] multiqc [DEBUG ] No samples found: preseq
[2022-11-12 07:36:13,892] multiqc [DEBUG ] No samples found: quast
[2022-11-12 07:36:13,895] multiqc [DEBUG ] No samples found: qorts
[2022-11-12 07:36:13,898] multiqc [DEBUG ] No samples found: rna_seqc
[2022-11-12 07:36:13,901] multiqc [DEBUG ] No samples found: rockhopper
[2022-11-12 07:36:13,904] multiqc [DEBUG ] No samples found: rsem
[2022-11-12 07:36:13,909] multiqc [DEBUG ] No samples found: rseqc
[2022-11-12 07:36:13,912] multiqc [DEBUG ] No samples found: busco
[2022-11-12 07:36:13,915] multiqc [DEBUG ] No samples found: goleft_indexcov
[2022-11-12 07:36:13,918] multiqc [DEBUG ] No samples found: disambiguate
[2022-11-12 07:36:13,921] multiqc [DEBUG ] No samples found: supernova
[2022-11-12 07:36:13,927] multiqc [DEBUG ] No samples found: deeptools
[2022-11-12 07:36:13,930] multiqc [DEBUG ] No samples found: sargasso
[2022-11-12 07:36:13,933] multiqc [DEBUG ] No samples found: verifybamid
[2022-11-12 07:36:13,936] multiqc [DEBUG ] No samples found: mirtrace
[2022-11-12 07:36:13,939] multiqc [DEBUG ] No samples found: happy
[2022-11-12 07:36:13,942] multiqc [DEBUG ] No samples found: mirtop
[2022-11-12 07:36:13,946] multiqc [DEBUG ] No samples found: homer
[2022-11-12 07:36:13,949] multiqc [DEBUG ] No samples found: macs2
[2022-11-12 07:36:13,952] multiqc [DEBUG ] No samples found: theta2
[2022-11-12 07:36:13,955] multiqc [DEBUG ] No samples found: snpeff
[2022-11-12 07:36:13,959] multiqc [DEBUG ] No samples found: gatk
[2022-11-12 07:36:13,962] multiqc [DEBUG ] No samples found: htseq
[2022-11-12 07:36:13,965] multiqc [DEBUG ] No samples found: bcftools
[2022-11-12 07:36:13,968] multiqc [DEBUG ] No samples found: featureCounts
[2022-11-12 07:36:13,971] multiqc [DEBUG ] No samples found: fgbio
[2022-11-12 07:36:13,977] multiqc [DEBUG ] No samples found: dragen
[2022-11-12 07:36:13,980] multiqc [DEBUG ] No samples found: dedup
[2022-11-12 07:36:13,983] multiqc [DEBUG ] No samples found: damageprofiler
[2022-11-12 07:36:13,992] multiqc [DEBUG ] No samples found: biobambam2
[2022-11-12 07:36:13,996] multiqc [DEBUG ] No samples found: mtnucratio
[2022-11-12 07:36:13,998] multiqc [DEBUG ] No samples found: picard
[2022-11-12 07:36:14,001] multiqc [DEBUG ] No samples found: prokka
[2022-11-12 07:36:14,004] multiqc [DEBUG ] No samples found: samblaster
[2022-11-12 07:36:14,008] multiqc [DEBUG ] No samples found: samtools
[2022-11-12 07:36:14,011] multiqc [DEBUG ] No samples found: sexdeterrmine
[2022-11-12 07:36:14,015] multiqc [DEBUG ] No samples found: bamtools
[2022-11-12 07:36:14,018] multiqc [DEBUG ] No samples found: jellyfish
[2022-11-12 07:36:14,022] multiqc [DEBUG ] No samples found: vcftools
[2022-11-12 07:36:14,025] multiqc [DEBUG ] No samples found: longranger
[2022-11-12 07:36:14,028] multiqc [DEBUG ] No samples found: stacks
[2022-11-12 07:36:14,031] multiqc [DEBUG ] No samples found: varscan2
[2022-11-12 07:36:14,037] multiqc [DEBUG ] No samples found: bbmap
[2022-11-12 07:36:14,040] multiqc [DEBUG ] No samples found: bismark
[2022-11-12 07:36:14,043] multiqc [DEBUG ] No samples found: biscuit
[2022-11-12 07:36:14,046] multiqc [DEBUG ] No samples found: hicexplorer
[2022-11-12 07:36:14,049] multiqc [DEBUG ] No samples found: hicup
[2022-11-12 07:36:14,052] multiqc [DEBUG ] No samples found: hicpro
[2022-11-12 07:36:14,055] multiqc [DEBUG ] No samples found: salmon
[2022-11-12 07:36:14,058] multiqc [DEBUG ] No samples found: kallisto
[2022-11-12 07:36:14,061] multiqc [DEBUG ] No samples found: slamdunk
[2022-11-12 07:36:14,064] multiqc [DEBUG ] No samples found: star
[2022-11-12 07:36:14,067] multiqc [DEBUG ] No samples found: hisat2
[2022-11-12 07:36:14,070] multiqc [DEBUG ] No samples found: tophat
[2022-11-12 07:36:14,073] multiqc [DEBUG ] No samples found: bowtie2
[2022-11-12 07:36:14,076] multiqc [DEBUG ] No samples found: bowtie1
[2022-11-12 07:36:14,079] multiqc [DEBUG ] No samples found: snpsplit
[2022-11-12 07:36:14,082] multiqc [DEBUG ] No samples found: kat
[2022-11-12 07:36:14,085] multiqc [DEBUG ] No samples found: leehom
[2022-11-12 07:36:14,088] multiqc [DEBUG ] No samples found: adapterRemoval
[2022-11-12 07:36:14,091] multiqc [DEBUG ] No samples found: clipandmerge
[2022-11-12 07:36:14,094] multiqc [DEBUG ] No samples found: cutadapt
[2022-11-12 07:36:14,097] multiqc [DEBUG ] No samples found: flexbar
[2022-11-12 07:36:14,100] multiqc [DEBUG ] No samples found: kaiju
[2022-11-12 07:36:14,103] multiqc [DEBUG ] No samples found: kraken
[2022-11-12 07:36:14,106] multiqc [DEBUG ] No samples found: malt
[2022-11-12 07:36:14,109] multiqc [DEBUG ] No samples found: trimmomatic
[2022-11-12 07:36:14,112] multiqc [DEBUG ] No samples found: sickle
[2022-11-12 07:36:14,115] multiqc [DEBUG ] No samples found: skewer
[2022-11-12 07:36:14,118] multiqc [DEBUG ] No samples found: sortmerna
[2022-11-12 07:36:14,121] multiqc [DEBUG ] No samples found: biobloomtools
[2022-11-12 07:36:14,124] multiqc [DEBUG ] No samples found: fastq_screen
[2022-11-12 07:36:14,127] multiqc [DEBUG ] No samples found: afterqc
[2022-11-12 07:36:14,130] multiqc [DEBUG ] No samples found: fastp
[2022-11-12 07:36:14,651] multiqc.modules.fastqc.fastqc [INFO ] Found 13 reports
[2022-11-12 07:36:14,861] multiqc [DEBUG ] No samples found: pycoqc
[2022-11-12 07:36:14,864] multiqc [DEBUG ] No samples found: minionqc
[2022-11-12 07:36:14,867] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2022-11-12 07:36:14,870] multiqc [DEBUG ] No samples found: clusterflow
[2022-11-12 07:36:14,873] multiqc [DEBUG ] No samples found: bcl2fastq
[2022-11-12 07:36:14,876] multiqc [DEBUG ] No samples found: interop
[2022-11-12 07:36:14,879] multiqc [DEBUG ] No samples found: ivar
[2022-11-12 07:36:14,882] multiqc [DEBUG ] No samples found: flash
[2022-11-12 07:36:14,885] multiqc [DEBUG ] No samples found: seqyclean
[2022-11-12 07:36:14,885] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2022-11-12 07:36:14,885] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2022-11-12 07:36:14,885] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2022-11-12 07:36:14,885] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2022-11-12 07:36:14,901] multiqc [INFO ] Compressing plot data
[2022-11-12 07:36:15,152] multiqc [INFO ] Report : multiqc_report.html
[2022-11-12 07:36:15,152] multiqc [INFO ] Data : multiqc_data
[2022-11-12 07:36:15,152] multiqc [DEBUG ] Moving data file from '/state/partition1/job-26929629/tmp0767z_e0/multiqc_data' to '/scratch/gencore/logs/html/HKTMWDRX2/merged/multiqc_data'
[2022-11-12 07:36:15,250] multiqc [INFO ] MultiQC complete