[2022-12-21 10:49:02,574] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-12-21 10:49:02,574] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-12-21 10:49:02,574] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-12-21 10:49:02,575] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-12-21 10:49:02,575] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-12-21 10:49:02,575] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKTM3DRX2/2 [2022-12-21 10:49:03,014] multiqc [WARNING] MultiQC Version v1.13 now available! [2022-12-21 10:49:03,014] multiqc [INFO ] This is MultiQC v1.9 [2022-12-21 10:49:03,014] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKTM3DRX2/2 [2022-12-21 10:49:03,014] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HKTM3DRX2/2 [2022-12-21 10:49:03,014] multiqc [INFO ] Template : default [2022-12-21 10:49:03,014] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-12-21 10:49:03,014] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HKTM3DRX2/2 [2022-12-21 10:49:03,015] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-12-21 10:49:03,015] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-28504443/tmp_u3u9ne1 [2022-12-21 10:49:03,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_B9_b_r_fastqc.html [2022-12-21 10:49:03,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_B9_b_r_fastqc.html [2022-12-21 10:49:03,111] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_B9_b_r_fastqc.html [2022-12-21 10:49:03,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_B9_b_r_fastqc.html [2022-12-21 10:49:03,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_B9_b_r_fastqc.html [2022-12-21 10:49:03,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_B9_b_r_fastqc.html [2022-12-21 10:49:03,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_B9_b_r_fastqc.html [2022-12-21 10:49:03,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_D9_b_r_fastqc.html [2022-12-21 10:49:03,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_D9_b_r_fastqc.html [2022-12-21 10:49:03,181] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_D9_b_r_fastqc.html [2022-12-21 10:49:03,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_D9_b_r_fastqc.html [2022-12-21 10:49:03,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_D9_b_r_fastqc.html [2022-12-21 10:49:03,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_D9_b_r_fastqc.html [2022-12-21 10:49:03,181] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_F3_b_r_fastqc.html [2022-12-21 10:49:03,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_F3_b_r_fastqc.html [2022-12-21 10:49:03,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_B3_b_r_fastqc.html [2022-12-21 10:49:03,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_B3_b_r_fastqc.html [2022-12-21 10:49:03,530] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_B3_b_r_fastqc.html [2022-12-21 10:49:03,530] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_B3_b_r_fastqc.html [2022-12-21 10:49:03,530] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_B3_b_r_fastqc.html [2022-12-21 10:49:03,530] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_B3_b_r_fastqc.html [2022-12-21 10:49:03,530] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_B3_b_r_fastqc.html [2022-12-21 10:49:03,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_G4_b_r_fastqc.html [2022-12-21 10:49:03,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_G4_b_r_fastqc.html [2022-12-21 10:49:03,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_C10_b_r_fastqc.html [2022-12-21 10:49:03,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_C10_b_r_fastqc.html [2022-12-21 10:49:03,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_G10_b_r_fastqc.html [2022-12-21 10:49:03,739] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_G10_b_r_fastqc.html [2022-12-21 10:49:03,739] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_G10_b_r_fastqc.html [2022-12-21 10:49:03,739] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_G10_b_r_fastqc.html [2022-12-21 10:49:03,739] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_G10_b_r_fastqc.html [2022-12-21 10:49:03,739] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_G10_b_r_fastqc.html [2022-12-21 10:49:03,739] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_G10_b_r_fastqc.html [2022-12-21 10:49:03,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_A10_b_r_fastqc.html [2022-12-21 10:49:03,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_A10_b_r_fastqc.html [2022-12-21 10:49:03,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_A10_b_r_fastqc.html [2022-12-21 10:49:03,876] multiqc [DEBUG ] File ignored by longranger/invocation 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longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_G4_b_r_fastqc.html [2022-12-21 10:49:04,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_G4_b_r_fastqc.html [2022-12-21 10:49:04,153] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_G4_b_r_fastqc.html [2022-12-21 10:49:04,153] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_G4_b_r_fastqc.html [2022-12-21 10:49:04,153] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_G4_b_r_fastqc.html [2022-12-21 10:49:04,153] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_G4_b_r_fastqc.html [2022-12-21 10:49:04,153] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_G4_b_r_fastqc.html [2022-12-21 10:49:04,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_B3_b_r_fastqc.html [2022-12-21 10:49:04,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_B3_b_r_fastqc.html [2022-12-21 10:49:04,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_B9_b_r_fastqc.html [2022-12-21 10:49:04,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_B9_b_r_fastqc.html [2022-12-21 10:49:04,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_F3_b_r_fastqc.html [2022-12-21 10:49:04,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_F3_b_r_fastqc.html [2022-12-21 10:49:04,364] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_F3_b_r_fastqc.html [2022-12-21 10:49:04,364] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_F3_b_r_fastqc.html [2022-12-21 10:49:04,364] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_F3_b_r_fastqc.html [2022-12-21 10:49:04,364] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_F3_b_r_fastqc.html [2022-12-21 10:49:04,364] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T14_F3_b_r_fastqc.html [2022-12-21 10:49:04,430] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,432] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,432] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,432] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,432] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,432] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_undetermined_fastqc.html [2022-12-21 10:49:04,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_undetermined_fastqc.html [2022-12-21 10:49:04,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_G10_b_r_fastqc.html [2022-12-21 10:49:04,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n02_T12_G10_b_r_fastqc.html [2022-12-21 10:49:04,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T14_D3_b_r_fastqc.html [2022-12-21 10:49:04,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_E10_b_r_fastqc.html [2022-12-21 10:49:04,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKTM3DRX2_l02_n01_T12_E10_b_r_fastqc.html [2022-12-21 10:49:05,046] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-12-21 10:49:05,046] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-12-21 10:49:05,057] multiqc.modules.custom_content.custom_content [INFO ] demux_report-2: Found 12 samples (table) [2022-12-21 10:49:05,059] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-12-21 10:49:05,069] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-12-21 10:49:05,072] multiqc [DEBUG ] No samples found: conpair [2022-12-21 10:49:05,075] multiqc [DEBUG ] No samples found: peddy [2022-12-21 10:49:05,078] multiqc [DEBUG ] No samples found: somalier [2022-12-21 10:49:05,081] multiqc [DEBUG ] No samples found: methylQA [2022-12-21 10:49:05,085] multiqc [DEBUG ] No samples found: mosdepth [2022-12-21 10:49:05,089] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-12-21 10:49:05,091] multiqc [DEBUG ] No samples found: qualimap [2022-12-21 10:49:05,094] multiqc [DEBUG ] No samples found: preseq [2022-12-21 10:49:05,097] multiqc [DEBUG ] No samples found: quast [2022-12-21 10:49:05,100] multiqc [DEBUG ] No samples found: qorts [2022-12-21 10:49:05,103] multiqc [DEBUG ] No samples found: rna_seqc [2022-12-21 10:49:05,106] multiqc [DEBUG ] No samples found: rockhopper [2022-12-21 10:49:05,109] multiqc [DEBUG ] No samples found: rsem [2022-12-21 10:49:05,115] multiqc [DEBUG ] No samples found: rseqc [2022-12-21 10:49:05,118] multiqc [DEBUG ] No samples found: busco [2022-12-21 10:49:05,121] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-12-21 10:49:05,124] multiqc [DEBUG ] No samples found: disambiguate [2022-12-21 10:49:05,127] multiqc [DEBUG ] No samples found: supernova [2022-12-21 10:49:05,133] multiqc [DEBUG ] No samples found: deeptools [2022-12-21 10:49:05,136] multiqc [DEBUG ] No samples found: sargasso [2022-12-21 10:49:05,138] multiqc [DEBUG ] No samples found: verifybamid [2022-12-21 10:49:05,142] multiqc [DEBUG ] No samples found: mirtrace [2022-12-21 10:49:05,145] multiqc [DEBUG ] No samples found: happy [2022-12-21 10:49:05,147] multiqc [DEBUG ] No samples found: mirtop [2022-12-21 10:49:05,151] multiqc [DEBUG ] No samples found: homer [2022-12-21 10:49:05,154] multiqc [DEBUG ] No samples found: macs2 [2022-12-21 10:49:05,157] multiqc [DEBUG ] No samples found: theta2 [2022-12-21 10:49:05,160] multiqc [DEBUG ] No samples found: snpeff [2022-12-21 10:49:05,165] multiqc [DEBUG ] No samples found: gatk [2022-12-21 10:49:05,167] multiqc [DEBUG ] No samples found: htseq [2022-12-21 10:49:05,171] multiqc [DEBUG ] No samples found: bcftools [2022-12-21 10:49:05,174] multiqc [DEBUG ] No samples found: featureCounts [2022-12-21 10:49:05,177] multiqc [DEBUG ] No samples found: fgbio [2022-12-21 10:49:05,183] multiqc [DEBUG ] No samples found: dragen [2022-12-21 10:49:05,186] multiqc [DEBUG ] No samples found: dedup [2022-12-21 10:49:05,189] multiqc [DEBUG ] No samples found: damageprofiler [2022-12-21 10:49:05,199] multiqc [DEBUG ] No samples found: biobambam2 [2022-12-21 10:49:05,202] multiqc [DEBUG ] No samples found: mtnucratio [2022-12-21 10:49:05,204] multiqc [DEBUG ] No samples found: picard [2022-12-21 10:49:05,207] multiqc [DEBUG ] No samples found: prokka [2022-12-21 10:49:05,210] multiqc [DEBUG ] No samples found: samblaster [2022-12-21 10:49:05,214] multiqc [DEBUG ] No samples found: samtools [2022-12-21 10:49:05,217] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-12-21 10:49:05,221] multiqc [DEBUG ] No samples found: bamtools [2022-12-21 10:49:05,223] multiqc [DEBUG ] No samples found: jellyfish [2022-12-21 10:49:05,228] multiqc [DEBUG ] No samples found: vcftools [2022-12-21 10:49:05,231] multiqc [DEBUG ] No samples found: longranger [2022-12-21 10:49:05,234] multiqc [DEBUG ] No samples found: stacks [2022-12-21 10:49:05,237] multiqc [DEBUG ] No samples found: varscan2 [2022-12-21 10:49:05,243] multiqc [DEBUG ] No samples found: bbmap [2022-12-21 10:49:05,246] multiqc [DEBUG ] No samples found: bismark [2022-12-21 10:49:05,250] multiqc [DEBUG ] No samples found: biscuit [2022-12-21 10:49:05,252] multiqc [DEBUG ] No samples found: hicexplorer [2022-12-21 10:49:05,255] multiqc [DEBUG ] No samples found: hicup [2022-12-21 10:49:05,258] multiqc [DEBUG ] No samples found: hicpro [2022-12-21 10:49:05,261] multiqc [DEBUG ] No samples found: salmon [2022-12-21 10:49:05,264] multiqc [DEBUG ] No samples found: kallisto [2022-12-21 10:49:05,267] multiqc [DEBUG ] No samples found: slamdunk [2022-12-21 10:49:05,270] multiqc [DEBUG ] No samples found: star [2022-12-21 10:49:05,273] multiqc [DEBUG ] No samples found: hisat2 [2022-12-21 10:49:05,276] multiqc [DEBUG ] No samples found: tophat [2022-12-21 10:49:05,279] multiqc [DEBUG ] No samples found: bowtie2 [2022-12-21 10:49:05,282] multiqc [DEBUG ] No samples found: bowtie1 [2022-12-21 10:49:05,286] multiqc [DEBUG ] No samples found: snpsplit [2022-12-21 10:49:05,289] multiqc [DEBUG ] No samples found: kat [2022-12-21 10:49:05,291] multiqc [DEBUG ] No samples found: leehom [2022-12-21 10:49:05,295] multiqc [DEBUG ] No samples found: adapterRemoval [2022-12-21 10:49:05,297] multiqc [DEBUG ] No samples found: clipandmerge [2022-12-21 10:49:05,300] multiqc [DEBUG ] No samples found: cutadapt [2022-12-21 10:49:05,303] multiqc [DEBUG ] No samples found: flexbar [2022-12-21 10:49:05,306] multiqc [DEBUG ] No samples found: kaiju [2022-12-21 10:49:05,309] multiqc [DEBUG ] No samples found: kraken [2022-12-21 10:49:05,312] multiqc [DEBUG ] No samples found: malt [2022-12-21 10:49:05,315] multiqc [DEBUG ] No samples found: trimmomatic [2022-12-21 10:49:05,318] multiqc [DEBUG ] No samples found: sickle [2022-12-21 10:49:05,321] multiqc [DEBUG ] No samples found: skewer [2022-12-21 10:49:05,324] multiqc [DEBUG ] No samples found: sortmerna [2022-12-21 10:49:05,327] multiqc [DEBUG ] No samples found: biobloomtools [2022-12-21 10:49:05,330] multiqc [DEBUG ] No samples found: fastq_screen [2022-12-21 10:49:05,333] multiqc [DEBUG ] No samples found: afterqc [2022-12-21 10:49:05,336] multiqc [DEBUG ] No samples found: fastp [2022-12-21 10:49:06,155] multiqc.modules.fastqc.fastqc [INFO ] Found 24 reports [2022-12-21 10:49:06,496] multiqc [DEBUG ] No samples found: pycoqc [2022-12-21 10:49:06,500] multiqc [DEBUG ] No samples found: minionqc [2022-12-21 10:49:06,503] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-12-21 10:49:06,506] multiqc [DEBUG ] No samples found: clusterflow [2022-12-21 10:49:06,509] multiqc [DEBUG ] No samples found: bcl2fastq [2022-12-21 10:49:06,513] multiqc [DEBUG ] No samples found: interop [2022-12-21 10:49:06,516] multiqc [DEBUG ] No samples found: ivar [2022-12-21 10:49:06,519] multiqc [DEBUG ] No samples found: flash [2022-12-21 10:49:06,522] multiqc [DEBUG ] No samples found: seqyclean [2022-12-21 10:49:06,522] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2022-12-21 10:49:06,522] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 2 Demultiplexing Report'. [2022-12-21 10:49:06,522] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2022-12-21 10:49:06,522] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-12-21 10:49:06,522] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-12-21 10:49:06,553] multiqc [INFO ] Compressing plot data [2022-12-21 10:49:06,947] multiqc [INFO ] Report : multiqc_report.html [2022-12-21 10:49:06,947] multiqc [INFO ] Data : multiqc_data [2022-12-21 10:49:06,947] multiqc [DEBUG ] Moving data file from '/state/partition1/job-28504443/tmp_u3u9ne1/multiqc_data' to '/scratch/gencore/logs/html/HKTM3DRX2/2/multiqc_data' [2022-12-21 10:49:07,044] multiqc [INFO ] MultiQC complete