FastQCFastQC Report
Fri 27 Jan 2023
HKTFTDRX2_n01_WCb.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKTFTDRX2_n01_WCb.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116074881
Sequences flagged as poor quality0
Sequence length101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATATACAGGCAACACGCAGATATAGGTGCGACGTGAACAGTGAGCTG3924000.33805763712133374No Hit
GTATATATATATACATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA2102010.18109085978731265No Hit
GAGATATATAGCAAAGAGATACTTTTGAGCAATGTTTCAGGGCACAGTAT1436370.1237451193251708No Hit
TTATTATACAGGTTCAAATATACTATCTGTTTCAGGGAAAACTCCCAGGT1319340.11366283459726312No Hit
GATATAGGTGCGACGTGAACAGTGAGCTGTATGTGCGCAGCTCGCGTTGC1164930.10036021488576843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)