HKT2VAFX2_n02_vk9-9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKT2VAFX2_n02_vk9-9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4158446
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17843	0.4290785548255286	No Hit
CGGGAAGGAATAAGAAGCAACTAAACGAGGGTGTAGAAAAAGACGAAGAG	5011	0.12050174512305799	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAAGGGG	19885	49.15625	70
CGGATCA	7455	40.187492	56
CCGGATC	7405	40.175255	55
TCTCGGG	4250	39.525787	43
CTCGGGG	4490	39.439114	44
GGATCAT	6680	39.086533	57
CGCCCGG	1490	38.5232	52
CCGTATC	35235	38.292603	55
CGTATCA	35360	38.23642	56
GTATCAT	33885	38.0003	57
TCGCCGG	10535	37.90669	52
TTCGCGA	260	37.752403	1
CGCCGGA	9025	37.695004	53
CCCGGTC	620	37.257782	54
TCATTAA	44165	37.228767	60
GTCGCCG	48535	37.107685	51
CGCCGTA	37625	37.106697	53
CATTAAA	45600	36.824265	61
TCGCCGT	37820	36.721035	52
GCCGGAT	9865	36.720455	54