FastQCFastQC Report
Fri 2 Aug 2024
HKMCHBGXV_n01_SRS_S2_WT_S6_Rep1_6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKMCHBGXV_n01_SRS_S2_WT_S6_Rep1_6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7685186
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGCCAATATCTCGTATGC272000.3539276733185117RNA PCR Primer, Index 6 (100% over 50bp)
ACAATCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGCCAATATCTC119010.15485636912366207RNA PCR Primer, Index 6 (100% over 44bp)
AAAATCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGCCAATATCTC79390.10330263964984061RNA PCR Primer, Index 6 (100% over 44bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)