FastQCFastQC Report
Fri 23 Feb 2024
HKKYGBGXV_n02_NS30.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKKYGBGXV_n02_NS30.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19677912
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC836980.42533984296707905No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG535790.2722799044939321No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG260370.1323158676591297No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)