FastQCFastQC Report
Fri 23 Feb 2024
HKKYGBGXV_n02_NS28.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKKYGBGXV_n02_NS28.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26703873
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC405510.15185437707856086No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG332660.12457369011603674No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)