FastQCFastQC Report
Fri 2 Oct 2020
HKKLVDRXX_n02_DHA60-S-R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKKLVDRXX_n02_DHA60-S-R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences154231150
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCATTAA6299200.024.0023894-95
ATCATTA8367550.022.90207194-95
CATTAAA4487850.022.80633294-95
TATCATT10527900.020.84422594-95
GTATCAT12866050.018.63297894-95
TATACCG372400.018.111075
TAGACGG164200.017.6160955
GTCTAGG352250.017.2974221
CGTATCA15459000.016.15420294-95
GTACCGT247300.016.0755866
AGTACCG320150.015.5331165
ACTGTCC238600.015.4472888
CCTAGAC359850.015.3901393
GTATAAG577800.015.1540891
TAGAGCG341700.015.0816975
CTAGACA410700.014.7105144
GTCTATG437550.014.4696871
CCGTATC18156600.014.33494594-95
TACCGTG310850.014.3016447
ATTAAAA3868600.014.17370194-95
Produced by FastQC (version 0.11.5)