FastQCFastQC Report
Fri 2 Oct 2020
HKKLVDRXX_n02_DHA15-S-R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKKLVDRXX_n02_DHA15-S-R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111028808
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCATTAA2963050.020.81731294-95
ATCATTA3715100.020.59534594-95
CATTAAA2183100.019.00217894-95
TATCATT4555300.018.69932694-95
TAGACGG127150.018.4160675
GTATCAT5314300.017.61488594-95
TATACCG311350.017.1010635
GTCTAGG281150.016.3334541
CGTATCA6290050.016.05260394-95
AGTACCG256450.015.2427575
GTACCGT200750.014.9766446
CCGTATC7421150.014.91499694-95
GGACTGC238700.014.54558856
CCTAGAC294150.014.1126613
GTATAAG492700.014.096591
TACACCG240800.013.9847965
TATACTG487250.013.75439555
GCCGTAT9037500.013.73765694-95
TAGAGCG267300.013.5401155
ACTGTCC188150.013.4802798
Produced by FastQC (version 0.11.5)