FastQCFastQC Report
Fri 2 Oct 2020
HKKLVDRXX_n02_BG75D-S-R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKKLVDRXX_n02_BG75D-S-R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47899710
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1424910.29747779266304536No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT1600350.015.41195294-95
CCGTATC1204150.015.14916194-95
CGCCGTA1997600.014.84050894-95
CATTAAA647750.013.77292394-95
CGTATCA1006000.013.36132994-95
TCATTAA718650.013.17761394-95
GTCTAGG137250.012.7370061
TAGAGCG159800.012.3944345
TATACCG127650.012.1673055
CCTAGAC137700.011.417253
TCGCCGT2585000.010.97205894-95
ATCATTA798750.010.93343192-93
TGGTCGC2749100.010.92551890-91
GTCTATG163850.010.8145911
GTATCAT914500.010.81261394-95
AGTACCG146500.010.6665945
GTCTAGT129350.010.6425341
TATCATT869150.010.50691892-93
CACTGAG236550.010.5012997
GTACCGT126250.010.3459116
Produced by FastQC (version 0.11.5)