FastQCFastQC Report
Fri 2 Oct 2020
HKKLVDRXX_n01_BG75D-S-R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKKLVDRXX_n01_BG75D-S-R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47899710
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT1678900.015.22459194-95
TGCCGTC2050550.014.64739294-95
GTCTAGG137700.014.3187791
CCGTCTT1331150.014.23279394-95
TATACCG127850.013.8582635
ATGCCGT2214600.012.93068394-95
TTCTGCT754650.012.67399594-95
TCTGCTT702900.012.627294-95
TAGAGCG152150.012.5815385
TATGCCG2406850.012.42036692-93
CCTAGAC136350.012.1237393
TAGACGG76500.012.108045
GTCTTAG112550.011.6930041
TGCTTGA448950.011.659894-95
CTGCTTG582450.011.27085694-95
CGTCTTC1254500.011.24587694-95
GCTTGAA358550.011.23449794-95
CGTATGC2689300.011.12736990-91
GTATGCC2601350.011.04891392-93
TATACTG190650.011.0125065
Produced by FastQC (version 0.11.5)