HKKJCDRXX_l02_n02_ds1793-03.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n02_ds1793-03.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24991169
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	2620624	10.48620014533934	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	127233	0.5091118386658903	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	35897	0.14363873894814605	Illumina Single End PCR Primer 1 (98% over 51bp)
GAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	25318	0.10130778596231334	Illumina Single End PCR Primer 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCGCCG	288960	44.042664	45
GGTCGCC	297800	42.686844	44
TGGTCGC	300915	42.11411	43
GTGGTCG	300985	42.10722	42
GGTGGTC	303500	41.759525	41
CGGTGGT	304730	41.607216	40
CTCGGTG	308320	41.21007	38
TCTCGGT	309935	41.047424	37
TCGGTGG	310570	40.960777	39
ATCTCGG	314260	40.552837	36
GCACACG	24200	40.50839	18
GATCTCG	325460	39.079334	35
CACACGT	17225	38.546616	19
AGCACAC	28900	38.202354	17
GAGCACA	36175	37.846344	16
AGATCTC	338625	37.78127	34
ACACGTC	13695	37.261234	20
AGAGCAC	37120	37.07075	15
TAGATCT	351965	36.354492	33
CACACGA	8335	34.984493	19