HKKJCDRXX_l02_n02_ds1792-04.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n02_ds1792-04.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23429744
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	1683091	7.183565471308606	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	122216	0.5216275517137533	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	30354	0.12955327211428344	Illumina Single End PCR Primer 1 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCGCCG	186840	43.731453	45
GGTCGCC	193190	42.25569	44
GTGGTCG	196070	41.500664	42
TGGTCGC	196315	41.4524	43
GGTGGTC	198320	41.016735	41
CTCGGTG	199335	40.900608	38
CGGTGGT	199430	40.786182	40
TCTCGGT	200425	40.731186	37
TCGGTGG	201010	40.604385	39
GCACACG	25940	40.228676	18
ATCTCGG	203565	40.206886	36
GATCTCG	212935	38.409176	35
GAGCACA	42405	38.27127	16
AGCACAC	31675	38.25813	17
AGAGCAC	42955	37.927982	15
CACACGT	15695	37.33011	19
AGATCTC	224215	36.714672	34
CACACGA	12185	36.59803	19
ACACGAG	12270	35.409294	20
ACACGTC	11405	35.39213	20