HKKJCDRXX_l02_n02_ds1792-03.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n02_ds1792-03.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25694918
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	3136096	12.205121650903887	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	208491	0.8114094779364542	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	58525	0.22776877513288815	Illumina Single End PCR Primer 1 (98% over 51bp)
GTGACTGGAGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT	37882	0.14742993147516562	Illumina Single End PCR Primer 1 (100% over 39bp)
GTGACTGGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG	36204	0.1408994572389762	Illumina Single End PCR Primer 1 (100% over 41bp)
GAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	33183	0.1291422685217365	Illumina Single End PCR Primer 1 (100% over 50bp)
AAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	30323	0.11801166285099644	Illumina Single End PCR Primer 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCGCCG	346110	43.960007	45
GGTCGCC	357355	42.537666	44
TGGTCGC	361760	41.937607	43
GTGGTCG	361900	41.930546	42
GGTGGTC	364170	41.65456	41
CTCGGTG	366215	41.524395	38
CGGTGGT	365645	41.495144	40
TCGGTGG	368005	41.364605	39
TCTCGGT	368015	41.356804	37
ATCTCGG	374540	40.69278	36
GCACACG	20285	38.976166	18
GATCTCG	392620	38.72793	35
GAGCACA	38295	37.713573	16
AGAGCAC	39200	37.141357	15
AGATCTC	414155	36.905945	34
AGCACAC	26750	36.798206	17
CACACGA	10585	35.47661	19
TAGATCT	433065	35.305473	33
GTGACTG	16615	34.59826	1
TGACTGG	16705	34.466167	2