HKKJCDRXX_l02_n02_ds1792-02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n02_ds1792-02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23026489
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	2378055	10.327475456636051	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	179873	0.7811568667720034	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	47414	0.2059106796524646	Illumina Single End PCR Primer 1 (98% over 51bp)
GTGACTGGAGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT	27726	0.12040915139081777	Illumina Single End PCR Primer 1 (100% over 39bp)
GTGACTGGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG	26950	0.11703911959830263	Illumina Single End PCR Primer 1 (100% over 41bp)
GAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	25820	0.11213172794167622	Illumina Single End PCR Primer 1 (100% over 50bp)
AAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	23526	0.10216928859627711	Illumina Single End PCR Primer 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCGCCG	262700	44.006123	45
GGTCGCC	271885	42.5055	44
GTGGTCG	275710	41.861134	42
TGGTCGC	275885	41.819088	43
GGTGGTC	277630	41.550743	41
CTCGGTG	278695	41.48615	38
CGGTGGT	278740	41.39335	40
TCGGTGG	280405	41.294136	39
TCTCGGT	280320	41.29051	37
GCACACG	28470	40.960503	18
ATCTCGG	284605	40.725143	36
GAGCACA	46100	39.30794	16
AGCACAC	34460	39.037582	17
GATCTCG	296980	38.973858	35
AGAGCAC	46750	38.891445	15
CACACGT	17255	38.32312	19
CACACGA	13070	37.75194	19
AGATCTC	310655	37.474056	34
ACACGTC	12100	36.48294	20
TAGATCT	323070	36.05017	33