HKKJCDRXX_l02_n02_ds1792-01.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n02_ds1792-01.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18262683
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	1668427	9.135716805685124	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	183577	1.0052027952300326	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	28057	0.15363021961230997	Illumina Single End PCR Primer 1 (98% over 51bp)
GAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	18989	0.1039770552880976	Illumina Single End PCR Primer 1 (100% over 50bp)
AAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	18457	0.10106401124084562	Illumina Single End PCR Primer 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCGCCG	184305	43.949593	45
GGTCGCC	190750	42.42477	44
GTGGTCG	193680	41.699207	42
TGGTCGC	194045	41.61625	43
GGTGGTC	195330	41.3487	41
CTCGGTG	196155	41.3067	38
CGGTGGT	196045	41.21511	40
TCTCGGT	197205	41.15113	37
GCACACG	25690	41.06706	18
TCGGTGG	197525	41.06099	39
ATCTCGG	199830	40.67935	36
GAGCACA	42975	39.75303	16
AGCACAC	31035	39.452953	17
AGAGCAC	43775	39.160164	15
GATCTCG	207280	39.11936	35
CACACGA	12995	38.68002	19
CACACGT	14250	38.147133	19
AGATCTC	216215	37.70152	34
ACACGAG	13345	37.210335	20
ACACGTC	9860	36.944496	20