HKKJCDRXX_l02_n02_ds1792-00.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n02_ds1792-00.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19454992
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	1744222	8.965421317058366	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	162852	0.8370705061199716	No Hit
GTGACTGGAGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT	21185	0.1088923603772235	Illumina Single End PCR Primer 1 (100% over 39bp)
GAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	20999	0.1079363075554079	Illumina Single End PCR Primer 1 (100% over 50bp)
AAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	20712	0.10646110777120855	Illumina Single End PCR Primer 1 (100% over 50bp)
GTGACTGGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG	19654	0.10102291483851547	Illumina Single End PCR Primer 1 (100% over 41bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCGCCG	189810	43.852097	45
GCACACG	44110	42.325947	18
GGTCGCC	197055	42.14493	44
GAGCACA	76125	41.422485	16
GTGGTCG	200480	41.3732	42
TGGTCGC	201065	41.26524	43
CACACGA	22155	41.130047	19
AGCACAC	52735	41.06076	17
GGTGGTC	202220	41.006767	41
CGGTGGT	203510	40.74794	40
AGAGCAC	77815	40.64141	15
CTCGGTG	205845	40.466953	38
ACACGAG	22290	40.396423	20
TCTCGGT	207135	40.290344	37
TCGGTGG	207080	40.279938	39
ATCTCGG	209685	39.834705	36
CACACGT	23745	39.787773	19
CACGAGA	22975	39.211086	21
AAGAGCA	113580	39.083687	14
ACACGTC	16125	38.469185	20