HKKJCDRXX_l02_n01_ds1792-03.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n01_ds1792-03.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25694918
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGAGATCTCGTATGC	2138949	8.32440484923906	TruSeq Adapter, Index 3 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCGAGATCTCGTATGC	907111	3.5303128813254046	TruSeq Adapter, Index 20 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGAGATCGCGTATGC	146134	0.5687272479328402	TruSeq Adapter, Index 3 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCGAGATCGCGTATGC	56948	0.22163137473332276	TruSeq Adapter, Index 20 (97% over 37bp)
AACTCCAGTCACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGA	26102	0.10158428993624342	TruSeq Adapter, Index 3 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	359885	41.7567	45
TCGTATG	342885	41.056946	44
CTCGTAT	347250	40.80439	43
ATCTCGT	350115	40.614517	41
TCTCGTA	350115	40.574593	42
GATCTCG	351620	40.57314	40
AGATCTC	353250	40.399296	39
GAGATCT	356280	40.211075	38
TAGAGAT	282285	38.135525	36
AGAGATC	289840	37.425674	37
GTAGAGA	290595	37.051174	35
AGTCGGA	11395	36.557472	1
CGTAGAG	300240	35.847164	34
TCGAGAT	125545	35.82567	36
GTCGAGA	126510	35.539948	35
ACGTAGA	314605	34.30191	33
CGTCGAG	131860	34.070408	34
CACGTAG	317475	33.98615	32
TCACGTA	324645	33.33534	31
CGAGATC	137835	32.79459	37