HKKJCDRXX_l02_n01_ds1792-02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKKJCDRXX_l02_n01_ds1792-02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23026489
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCATCTCGTATGC	2280145	9.902269512299508	TruSeq Adapter, Index 18 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCATCGCGTATGC	195630	0.849586752022855	TruSeq Adapter, Index 18 (98% over 50bp)
AGTCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCATCTCGTATGCC	32058	0.139222267016044	TruSeq Adapter, Index 18 (100% over 49bp)
AACTCCAGTCACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCG	28404	0.12335358638479361	TruSeq Adapter, Index 18 (100% over 38bp)
CTCCAGTCACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCA	27547	0.11963178580981235	TruSeq Adapter, Index 18 (100% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	276770	41.56804	45
TCGTATG	259500	40.74315	44
CATCTCG	261560	40.575737	40
CTCGTAT	262025	40.459843	43
ATCTCGT	263355	40.2744	41
CGCATCT	264040	40.212433	38
TCTCGTA	263805	40.210724	42
GCATCTC	263580	40.209286	39
CCGCATC	296270	39.05191	37
TCCGCAT	300545	38.441616	36
GTCCGCA	310385	37.26931	35
AGTCGGA	8825	36.237602	1
CGTCCGC	320650	36.07176	34
ACGTCCG	332325	34.866127	33
CACGTCC	339205	34.225277	32
TCACGTC	341425	33.999443	31
GTCACGT	345165	33.657043	30
AGTCACG	347965	33.461292	29
CAGTCAC	362380	32.16005	28
CCAGTCA	367185	31.757042	27