FastQCFastQC Report
Sat 22 Feb 2020
HKKJCDRXX_l01_n01_mb268.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKKJCDRXX_l01_n01_mb268.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36058521
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGAGC181300.026.38419745
TAGGACG125250.019.0778774
CTCCGAG272250.017.54531544
GGACGTG136900.016.8791376
TCTCCGA294100.016.31080643
AGGACGT148450.016.2479235
CGTCTAG21350.015.91562751
GACGTGA80750.015.01839357
ATCTCCG338800.014.07248642
GTCCTAC166600.014.0206151
GTAGGAC158950.013.9147783
TATACAC1889600.013.40985545
GTCCTAA133100.012.9845791
TTAGGAC122400.012.8492873
GACGTGG88850.012.7629297
TAGACGC29950.012.6961824
CTAGACG22100.012.6244553
CTGTAGG198750.012.1375871
TGTAGGA209000.012.0914442
CTACGGT21000.011.89271313
Produced by FastQC (version 0.11.5)