HKHNTBCXY_l02n02_hk-37d-30ar-2.35200000093fb8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKHNTBCXY_l02n02_hk-37d-30ar-2.35200000093fb8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24619743
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	1707643	6.936071590999142	Illumina Single End PCR Primer 1 (100% over 51bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	206665	0.8394279339146635	Illumina Single End PCR Primer 1 (100% over 51bp)
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	89403	0.36313539097463365	Illumina Single End PCR Primer 1 (98% over 51bp)
AGTTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	68106	0.2766316447738711	Illumina Single End PCR Primer 1 (98% over 51bp)
GGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	56438	0.22923878612380316	Illumina Single End PCR Primer 1 (98% over 51bp)
AGATGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	35124	0.14266598964903898	Illumina Single End PCR Primer 1 (100% over 47bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	70445	42.523712	18
GAGCACA	109635	42.39556	16
AGAGCAC	110260	42.346527	15
AGCACAC	81935	41.991695	17
CACACGA	37655	41.91701	19
ACACGAG	37945	41.58454	20
CACGAGA	38960	40.508507	21
CACACGT	34050	40.375565	19
AAGAGCA	131415	40.165012	14
TCGCCGT	33045	39.73489	45
GTCGCCG	258030	38.98087	45
GGTCGCC	260800	38.549038	44
GTGGTCG	262325	38.246635	42
GGTCGGA	11435	38.10125	2
ACACGTC	19690	38.0926	20
TGGTCGC	264460	37.894695	43
CACGTAG	16065	37.839214	21
GGTGGTC	266555	37.634865	41
ACACGTA	16435	37.41025	20
CGGTGGT	269300	37.220036	40