FastQCFastQC Report
Sat 8 Jul 2017
HKHNTBCXY_l02n02_h-37d-30ar-1.35200000094007.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKHNTBCXY_l02n02_h-37d-30ar-1.35200000094007.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67057
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC253.8515085E-545.00000417
CACACGT301.1284975E-437.49999619
AGAGCAC301.1284975E-437.49999615
GCACACG301.1284975E-437.49999618
AAGATCG250.002093018336.0000046
CGTCTGA250.002093018336.00000423
AAGAGCA406.105298E-428.12500214
GATCGGA500.002242609922.5000028
GAGCACA500.002242609922.50000216
CGGAAGA500.002242609922.50000211
ATCGGAA500.002242609922.5000029
AGATCGG500.002242609922.5000027
TCGGAAG550.00389859620.45454610
Produced by FastQC (version 0.11.2)