HKHNTBCXY_l02n01_k-asyn-2.35100000093f1b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKHNTBCXY_l02n01_k-asyn-2.35100000093f1b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17788559
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC	1685348	9.474336847633358	TruSeq Adapter, Index 7 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	154607	0.8691372921213012	TruSeq Adapter, Index 7 (100% over 51bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCAACTCGTATGC	30410	0.1709525768782058	TruSeq Adapter, Index 7 (98% over 50bp)
AACTCCAGTCACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGAT	24199	0.13603687628660646	TruSeq Adapter, Index 7 (100% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCACCTCGTATGC	19206	0.10796827331544954	TruSeq Adapter, Index 7 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	215280	38.809273	45
CATCTCG	209325	37.979424	40
CTCGTAT	218630	37.96299	43
TCGTATG	220270	37.87901	44
ATCTCGT	211590	37.749393	41
TCTCGTA	211945	37.710163	42
TCATCTC	220535	35.956043	39
GATCATC	221710	35.683277	37
ATCATCT	224090	35.386635	38
GTATGCC	29455	35.15524	45
AGATCAT	228235	34.818512	36
CAGATCA	247145	33.404465	35
AGTCACC	269615	31.010084	29
TCACCAG	269030	30.942148	31
ACCAGAT	268640	30.897448	33
CACCAGA	269635	30.877728	32
GTCACCA	271290	30.773956	30
CCAGATC	270770	30.539717	34
CAGTCAC	278595	30.215666	28
CCAGTCA	283115	29.722519	27