HKHNTBCXY_l02n01_hk-37d-30ar-1.35100000093f92.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKHNTBCXY_l02n01_hk-37d-30ar-1.35100000093f92.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4549911
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	453035	9.957007950265401	TruSeq Adapter, Index 6 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	36192	0.7954441306654131	TruSeq Adapter, Index 6 (100% over 51bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATAACTCGTATGC	8190	0.18000352094799216	TruSeq Adapter, Index 6 (98% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGATCGGAAGAGCACAC	6197	0.13620046633879213	TruSeq Adapter, Index 14 (97% over 38bp)
AACTCCAGTCACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAA	5964	0.1310794870493071	TruSeq Adapter, Index 6 (100% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATACCTCGTATGC	4839	0.10635372867733017	TruSeq Adapter, Index 6 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	57445	39.088017	45
CTCGTAT	58105	38.465885	43
TCGTATG	58235	38.465023	44
TATCTCG	56000	38.300957	40
TCTCGTA	56600	38.172806	42
ATCTCGT	56645	38.134956	41
ATATCTC	62055	34.55287	39
GTATGCC	7360	34.118916	45
AATATCT	62950	34.025867	38
CAATATC	63295	33.819073	37
CCAATAT	63790	33.620132	36
GCCAATA	67675	32.800648	35
CGCCAAT	68830	32.350163	34
CACGCCA	70270	31.81851	32
GTCACGC	70770	31.778112	30
TCACGCC	70580	31.76802	31
ACGCCAA	70415	31.724228	33
AGTCACG	71545	31.527884	29
CAGTCAC	74840	30.63887	28
CCAGTCA	77035	29.811935	27