HKHNTBCXY_l01n02_hk-60ar-2.35200000093f82.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKHNTBCXY_l01n02_hk-60ar-2.35200000093f82.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29453273
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	1609430	5.464350260835188	Illumina Single End PCR Primer 1 (100% over 51bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	166875	0.5665754023330446	Illumina Single End PCR Primer 1 (100% over 51bp)
AGATCTGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	55846	0.18960880850152037	Illumina Single End PCR Primer 1 (98% over 51bp)
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	50987	0.17311149086894348	Illumina Single End PCR Primer 1 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	33865	39.401066	45
GTCGCCG	274150	39.090355	45
GGTCGCC	279645	38.250412	44
GTGGTCG	281210	37.626427	42
TGGTCGC	281285	37.57667	43
GGTGGTC	284735	37.182743	41
CGGTGGT	284390	36.87992	40
CTCGGTG	289075	36.085396	38
TCGGTGG	292065	35.814167	39
TCTCGGT	291535	35.73638	37
TCGTGTG	12850	34.214176	15
ATCTCGG	308415	34.030697	36
GGTCGGA	9440	31.619362	2
GTGACTG	15535	31.101624	1
GATCTCG	340095	30.77079	35
CGTGTGG	12805	30.312067	16
TGACTGG	16405	29.465536	2
GATCGAG	10145	29.315823	8
AGGTCGG	9815	29.21998	1
TCGCCGG	3315	29.056133	45