FastQCFastQC Report
Tue 28 Sep 2021
HKG7MDRXY_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKG7MDRXY_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1048362792
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGAACT14942439114.253118494880729No Hit
CAGCGGAA14673775613.9968489076251No Hit
ATTGCGTG12426893011.853618894936897No Hit
TACAGACT12102388611.544084445148831No Hit
GCGTACAC12032443911.477366415346797No Hit
GCATTCGG11236596410.718232739416033No Hit
CGACTTGA10836388910.336487504795No Hit
ATTACTTC1024723369.774510959561029No Hit
GGGGGGGG234510872.236924772507569No Hit
CAGCGAAA12659020.12075037474241074No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)