HKFN7BGX2_n01_mb28.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKFN7BGX2_n01_mb28.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	41762335
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC	2698648	6.461918376929835	TruSeq Adapter, Index 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	291515	43.162685	44
GATCGGA	301670	42.82009	1
ATCGGAA	303980	42.77974	2
TCGGAAG	304105	42.65773	3
CGGAAGA	304470	42.537174	4
ACACGTC	302055	42.47677	13
CGTCTGA	301290	42.466362	16
ACGTCTG	302125	42.37443	15
CACGTCT	303390	42.24748	14
GCACACG	304440	42.207344	11
CACACGT	304450	42.169357	12
CGATCTC	291075	42.120853	38
CACGATC	290505	42.104347	36
ACGATCT	290810	42.1023	37
GATCTCG	291685	42.087273	39
TCACGAT	294445	42.036407	35
CATCACG	297950	42.002037	33
ATCACGA	296645	41.950897	34
CTCGTAT	295720	41.950573	42
TCTCGTA	294360	41.949482	41