HKFN7BGX2_n01_mb26.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKFN7BGX2_n01_mb26.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37464165
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC	1216975	3.2483708098125237	TruSeq Adapter, Index 7 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	134020	42.991802	44
ACACGTC	141415	42.79382	13
CGTCTGA	141180	42.761406	16
CTCGTAT	132220	42.686707	42
TCGTATG	132745	42.676975	43
ACGTCTG	141610	42.65636	15
TCTCGTA	132465	42.647556	41
GATCGGA	140900	42.633278	1
ATCGGAA	142565	42.51257	2
CATCTCG	134200	42.45067	39
CACGTCT	142480	42.435703	14
ATCTCGT	134105	42.418575	40
TCGGAAG	143045	42.33973	3
GCACACG	143270	42.277794	11
CACACGT	143470	42.205456	12
CGGAAGA	143775	42.126057	4
GATCATC	141885	41.276096	36
GAACTCC	146565	41.046104	21
CCAGATC	145375	40.859905	33
AGTCACC	147120	40.706272	28