HKFN7BGX2_n01_mb25.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKFN7BGX2_n01_mb25.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	32288495
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	1800708	5.57693382735863	TruSeq Adapter, Index 6 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	194135	43.43655	1
ATCGGAA	195725	43.327007	2
TCGGAAG	196910	43.038185	3
CGTATGC	194925	42.899307	44
CGCCAAT	194345	42.781765	33
CGTCTGA	197645	42.769432	16
ACACGTC	197970	42.767815	13
ACGTCTG	197865	42.73064	15
ACGCCAA	195460	42.651325	32
GTCACGC	195765	42.64589	29
CTCGTAT	195315	42.64556	42
CGGAAGA	198815	42.628857	4
TATCTCG	195060	42.623028	39
TCGTATG	196165	42.61441	43
TCTCGTA	195485	42.60715	41
TCACGCC	196160	42.507107	30
CACGTCT	199155	42.502132	14
CACGCCA	196290	42.48218	31
AGTCACG	197060	42.477604	28
ATCTCGT	196290	42.445595	40