HKFN7BGX2_n01_mb22.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKFN7BGX2_n01_mb22.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	44733681
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	1614602	3.6093653906996837	TruSeq Adapter, Index 2 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	174500	43.13933	44
CGTCTGA	181400	42.908077	16
ACACGTC	181870	42.883015	13
GATCGGA	181470	42.870926	1
CACCGAT	179410	42.864258	31
TCTCGTA	173905	42.856537	41
CTCGTAT	173745	42.847748	42
ATCGGAA	182830	42.847187	2
CGATGTA	178730	42.84717	34
TCGTATG	174110	42.83266	43
ACCGATG	179325	42.81583	32
ACGTCTG	181885	42.811707	15
CCGATGT	179270	42.730743	33
TATCTCG	175265	42.715584	39
GTCACCG	180320	42.688534	29
TCGGAAG	183825	42.581806	3
ATCTCGT	175770	42.545345	40
TCACCGA	181005	42.52894	30
CGGAAGA	184240	42.480927	4
CACGTCT	183465	42.474678	14