HKFJGAFXY_n01_spoVG_T1_rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKFJGAFXY_n01_spoVG_T1_rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6373495
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	10573	0.1658901434770091	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	8615	0.13516916542650462	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	8285	0.1299914724966443	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	7746	0.12153457404453914	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	7581	0.11894572757960899	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	7433	0.11662361075045953	No Hit
TGGGAGTCGAACCCACGTCCAGAAACATCGATTACTTAAGCGTCTACGAG	6432	0.10091794219654993	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACTAAT	1960	47.321278	31
GCACACG	2650	35.264038	11
CACACGT	2685	35.195415	12
TGCGCAT	2675	33.49522	37
GTCACTA	2790	33.243618	29
ACTCCAG	2905	32.650497	23
ATGCGCA	2900	31.741278	36
AGTCACT	2995	31.552488	28
ACTAATG	2975	31.294016	32
TCCAGTC	3075	30.503965	25
CAGTCAC	3255	29.569796	27
ACACGTC	3215	29.502237	13
TAATGCG	3180	29.16657	34
GAACTCC	3250	29.076832	21
AATGCGC	3225	28.97665	35
AGCACAC	3555	26.976002	10
CACGTCT	3480	26.953936	14
ACGTCTG	3550	26.915403	15
CTCCAGT	3750	25.013252	24
CTAATTA	1090	24.083057	3